PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995364.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 415aa MW: 46294.7 Da PI: 7.5379

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995364.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.2	6.1e-13	238	281	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+ri+++++ Lr+l+Pk + K++ a+i+ A+eYIk+L+ XP_024995364.1 238 VTERNRRHRIKDGLFALRSLVPKiS------KMDRASIVGDAIEYIKELE 281 57*******************66......**************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MGALEWLRTL VETKPWDYCI VWQFGDDPSR YIQWIGCCCN GGPGVCRNVK EELDGTKQHF 60 SVLCRDTYIK HSLKTKTCEK LAKIPFSLPL YSGIHGEVAM SAQPSWSHDP VGTQVIIPVD 120 GGLIELYRSK QVPRDQEMIE TLMAQFNILS KHEQFRVEDT ETAAQSTLHP KTEGSANGSN 180 PWSENSSLVS AGSAHVSPTH SVGKPITLLG YAISGQPKGN TKTKQKTGKE QYQSKNLVTE 240 RNRRHRIKDG LFALRSLVPK ISKMDRASIV GDAIEYIKEL ETNVQELQDE LKRLEDNDSK 300 SHEDEVEVCK PKREYEHSPT NGHDLVSIAL DSKKEVQVEV HQIGAKDFLI KLVCGQKRGG 360 FLRIMETVDS LGLQVLDANV ATCNGRVLNV LKVEAKGKDV MAKSLKDSLL NSWLS

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MGALEWLRTL VETKPWDYCI VWQFGDDPSR YIQWIGCCCN GGPGVCRNVK EELDGTKQHF  60
SVLCRDTYIK HSLKTKTCEK LAKIPFSLPL YSGIHGEVAM SAQPSWSHDP VGTQVIIPVD  120
GGLIELYRSK QVPRDQEMIE TLMAQFNILS KHEQFRVEDT ETAAQSTLHP KTEGSANGSN  180
PWSENSSLVS AGSAHVSPTH SVGKPITLLG YAISGQPKGN TKTKQKTGKE QYQSKNLVTE  240
RNRRHRIKDG LFALRSLVPK ISKMDRASIV GDAIEYIKEL ETNVQELQDE LKRLEDNDSK  300
SHEDEVEVCK PKREYEHSPT NGHDLVSIAL DSKKEVQVEV HQIGAKDFLI KLVCGQKRGG  360
FLRIMETVDS LGLQVLDANV ATCNGRVLNV LKVEAKGKDV MAKSLKDSLL NSWLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	6e-74	bHLH family protein