PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995247.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 683aa MW: 78551.6 Da PI: 8.4397

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995247.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	33.6	1.3e-10	88	147	1	48
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............t 48 k+Y++YA ++GF+vr +++k++ +ng i +r+fvC++eg+++++ + t XP_024995247.1 88 KMYRAYADNAGFDVRLHAKKTN-KNGDIQTRWFVCNREGTPNKKFFDsmdmqsgerryrnT 147 68***********9987777.7888***********999877767776554444433 PP

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence
MVVADGGRGD HGGRGSGAWW MTVVIEDMKM VDCGGYGGGV PILVISEHEP EYAVEECSQG 60 NQFFIPKVDD ELKPKINTHF LTINEADKMY RAYADNAGFD VRLHAKKTNK NGDIQTRWFV 120 CNREGTPNKK FFDSMDMQSG ERRYRNTNLK RKNRQMRYTD YKNVLNSSSY KVGAIKAHRI 180 QTVLNGGFEH NRYSEIDFKN FKGDAVACVG KKDAKMLINK LSNRRDIVPG YFFEYKCNDQ 240 ELGAIFWADE VARVNYKEFE DVISFDGTFR TNKHAMIFVP FLAVDNHKAS VVVGSALISG 300 ETIENFTWVL RAFLKCHEKQ PVFVITEQCS AMKQAVPLVF TEAKHRLCMW HIMKKVPSKI 360 SVALNQDPLF NKVINKLVWN IYIGPSEFET KWQEMIEQYN LGRDPWFTEM YEICASWIPT 420 FYKDTPMSGL MKTTSRSESS NSYINIYKSY WFDLVQFLNN YDVAIEKQRY KQAVHETITR 480 TTYPKLFTPL CLESQASRVY SRNVFFDIQK EIKKAVSRNY TANTVECECI LFTRNGYLCR 540 HAFKIQSAKI RYGEVDAEKD KSIIDVYSKV DDIISIAWND KSILTRLEQN LDNFMVDIEK 600 EVPYEDPSQQ KLDAIRDHLG VSIPDDVDIL PPSGIRNKGC GSGKRLVSVS EKIQSISKKA 660 RRKCATCGQR TGHDSRNCPE LIE

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence

MVVADGGRGD HGGRGSGAWW MTVVIEDMKM VDCGGYGGGV PILVISEHEP EYAVEECSQG  60
NQFFIPKVDD ELKPKINTHF LTINEADKMY RAYADNAGFD VRLHAKKTNK NGDIQTRWFV  120
CNREGTPNKK FFDSMDMQSG ERRYRNTNLK RKNRQMRYTD YKNVLNSSSY KVGAIKAHRI  180
QTVLNGGFEH NRYSEIDFKN FKGDAVACVG KKDAKMLINK LSNRRDIVPG YFFEYKCNDQ  240
ELGAIFWADE VARVNYKEFE DVISFDGTFR TNKHAMIFVP FLAVDNHKAS VVVGSALISG  300
ETIENFTWVL RAFLKCHEKQ PVFVITEQCS AMKQAVPLVF TEAKHRLCMW HIMKKVPSKI  360
SVALNQDPLF NKVINKLVWN IYIGPSEFET KWQEMIEQYN LGRDPWFTEM YEICASWIPT  420
FYKDTPMSGL MKTTSRSESS NSYINIYKSY WFDLVQFLNN YDVAIEKQRY KQAVHETITR  480
TTYPKLFTPL CLESQASRVY SRNVFFDIQK EIKKAVSRNY TANTVECECI LFTRNGYLCR  540
HAFKIQSAKI RYGEVDAEKD KSIIDVYSKV DDIISIAWND KSILTRLEQN LDNFMVDIEK  600
EVPYEDPSQQ KLDAIRDHLG VSIPDDVDIL PPSGIRNKGC GSGKRLVSVS EKIQSISKKA  660
RRKCATCGQR TGHDSRNCPE LIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-46	FAR1 family protein