PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995241.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 524aa MW: 61298.2 Da PI: 9.3048

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995241.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.6	7.3e-07	11	54	48	90
FAR1 48 tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +++e +++ +rtgC+ ++k +++k + ++e + +e++HnH+l XP_024995241.1 11 HQREVWNSNIKRTGCTTSVKFRLMKgTTTYECYGFEEDHNHSLL 54 356777999**************9*************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence
MSFDLMVRRK HQREVWNSNI KRTGCTTSVK FRLMKGTTTY ECYGFEEDHN HSLLRHEDMD 60 LTRKGRQMKF SDQRFVHDAG ISNMGATRAH KLHTSLRGGY EYGGPAVDEV ARFNYSEFGD 120 VISFDATFRT NRHSMVFVPF TAVDNHNCNV VVGSALVGHE HVPNYKWLLQ AFWKTHSKPP 180 MMILTDQCPA MKQAIASVFP DSRHRLCIWH IMNKVLNKFS YDLHNNTTFK KQFFKLFMLG 240 FEFALEKQRR EQRRLDYHTK TTLPKWLTYS QLERHACEIY TRSVFFEVQT KIHRAPWTCS 300 IKSVNSNEEA ETYLIEHLDK RDEKIAEYKV VRNLKESTVV CSCNHIGRHG YLCRHVFKVL 360 QNAGFESIPE EYILRRWRRD LIHIELQNSC QRICDVGEDQ QRIINDTYEI VDDVLDILRD 420 DKEKLESFVA TLKEMRDDVA KDRTYEPSMK RKERGIEQIL GFTRPDNIEI HPATGIRNKG 480 CGTSKRLIGT AKKAAVKSSR PKRMCSGCKM MSNHDICNCP NKTK

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence

MSFDLMVRRK HQREVWNSNI KRTGCTTSVK FRLMKGTTTY ECYGFEEDHN HSLLRHEDMD  60
LTRKGRQMKF SDQRFVHDAG ISNMGATRAH KLHTSLRGGY EYGGPAVDEV ARFNYSEFGD  120
VISFDATFRT NRHSMVFVPF TAVDNHNCNV VVGSALVGHE HVPNYKWLLQ AFWKTHSKPP  180
MMILTDQCPA MKQAIASVFP DSRHRLCIWH IMNKVLNKFS YDLHNNTTFK KQFFKLFMLG  240
FEFALEKQRR EQRRLDYHTK TTLPKWLTYS QLERHACEIY TRSVFFEVQT KIHRAPWTCS  300
IKSVNSNEEA ETYLIEHLDK RDEKIAEYKV VRNLKESTVV CSCNHIGRHG YLCRHVFKVL  360
QNAGFESIPE EYILRRWRRD LIHIELQNSC QRICDVGEDQ QRIINDTYEI VDDVLDILRD  420
DKEKLESFVA TLKEMRDDVA KDRTYEPSMK RKERGIEQIL GFTRPDNIEI HPATGIRNKG  480
CGTSKRLIGT AKKAAVKSSR PKRMCSGCKM MSNHDICNCP NKTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-25	FAR1 family protein