PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995115.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 362aa MW: 41806.8 Da PI: 6.2318

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995115.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.7	3.4e-51	17	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPt+eel+++yL+kk++ +k++l +vi+evd++k+ePwd+++k++ +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk v XP_024995115.1 17 VPPGFRFHPTEEELLHYYLRKKIAYEKIDL-DVIREVDLNKLEPWDIQEKCNIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVV 110 69**************************.9***********964444222455******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s + + +g++ktLvfykgrap+g k+dW+mheyrl XP_024995115.1 111 YS-SLKRIGMRKTLVFYKGRAPHGLKSDWIMHEYRL 145 .8999***************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MSLKEDISMK VNGRSKVPPG FRFHPTEEEL LHYYLRKKIA YEKIDLDVIR EVDLNKLEPW 60 DIQEKCNIGS TPQNDWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKVV YSSLKRIGMR 120 KTLVFYKGRA PHGLKSDWIM HEYRLDDLHI IPTQDSTVSN FCDCGHEEGW VVCRVFKKKN 180 YHKSLESTQR SLSATTDTTG AQSESLNNDG SIILDQLLAY MDSSRSCKQE SSETFTHNSN 240 SMQQFVNPMS NVDNMFLHLP RLDSPCPESD QAEYPRNTMV DEHEQCISNW VDLDKFVASQ 300 LNGQMESSKH HLFSCYGEHN DEQDLCGYRM TDRLNEEASY NTEVDIWSLA KPSLDPLCHL 360 SV

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MSLKEDISMK VNGRSKVPPG FRFHPTEEEL LHYYLRKKIA YEKIDLDVIR EVDLNKLEPW  60
DIQEKCNIGS TPQNDWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKVV YSSLKRIGMR  120
KTLVFYKGRA PHGLKSDWIM HEYRLDDLHI IPTQDSTVSN FCDCGHEEGW VVCRVFKKKN  180
YHKSLESTQR SLSATTDTTG AQSESLNNDG SIILDQLLAY MDSSRSCKQE SSETFTHNSN  240
SMQQFVNPMS NVDNMFLHLP RLDSPCPESD QAEYPRNTMV DEHEQCISNW VDLDKFVASQ  300
LNGQMESSKH HLFSCYGEHN DEQDLCGYRM TDRLNEEASY NTEVDIWSLA KPSLDPLCHL  360
SV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32770.1	1e-108	NAC family protein