PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995022.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 450aa MW: 51033.5 Da PI: 7.303

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995022.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.9	3.1e-10	5	45	7	48
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 Ed++l + + +G+++W+ Ia+++ ++t qc+ rw++yl XP_024995022.1 5 KEDDILRKQIGIHGTNNWAIIASKFE-KKTTRQCRRRWFTYL 45 69**********************.9**********97 PP
2	Myb_DNA-binding	43.7	6.4e-14	51	92	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +g WT+eEd +l +a k +G++ W+ Ia+ + gRt++ +k+r+ XP_024995022.1 51 KGGWTPEEDIILCEAQKIFGNR-WTEIAKVVS-GRTDNAVKNRF 92 688*****************.*****.********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MPYEKEDDIL RKQIGIHGTN NWAIIASKFE KKTTRQCRRR WFTYLNSDFK KGGWTPEEDI 60 ILCEAQKIFG NRWTEIAKVV SGRTDNAVKN RFSILCKRKA KHEASSNENN AAEVNANNKR 120 TMFDNREDTE GILETSMHPM KLRRKHIAAA TEDCNLVGLV GDSRTVDQKR RPPFVVLVQN 180 CDNTNTSTAQ IHASSKKALI DEASSGIRVE GTTFKKDDPK IVALMQQAEL LNSLASEVNI 240 EKTDQSFKSA WKAVQDFLNH TKESDKLRFH ISDMEFQLEN FKILVEDIRS CRDDNQRFWS 300 QADVYQGSPD SSEYGTMSSI PSHINEKTKM AEDLCKVEPR PSRPIHPNNL VDDRNIEEYD 360 AAAHQDIIPS SSKLNDDVRG VCPLSNSEFS SPLQVTPLFR SMAEGILSPQ FSESEKHFLL 420 KTLGMEPTTP NPTARTSQSP PCKRALLHCL

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MPYEKEDDIL RKQIGIHGTN NWAIIASKFE KKTTRQCRRR WFTYLNSDFK KGGWTPEEDI  60
ILCEAQKIFG NRWTEIAKVV SGRTDNAVKN RFSILCKRKA KHEASSNENN AAEVNANNKR  120
TMFDNREDTE GILETSMHPM KLRRKHIAAA TEDCNLVGLV GDSRTVDQKR RPPFVVLVQN  180
CDNTNTSTAQ IHASSKKALI DEASSGIRVE GTTFKKDDPK IVALMQQAEL LNSLASEVNI  240
EKTDQSFKSA WKAVQDFLNH TKESDKLRFH ISDMEFQLEN FKILVEDIRS CRDDNQRFWS  300
QADVYQGSPD SSEYGTMSSI PSHINEKTKM AEDLCKVEPR PSRPIHPNNL VDDRNIEEYD  360
AAAHQDIIPS SSKLNDDVRG VCPLSNSEFS SPLQVTPLFR SMAEGILSPQ FSESEKHFLL  420
KTLGMEPTTP NPTARTSQSP PCKRALLHCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14350.1	1e-133	MYB family protein