PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995020.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 477aa MW: 53956.7 Da PI: 7.7237

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995020.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.5	1.5e-13	28	72	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W++eEd++l + + +G+++W+ Ia+++ ++t qc+ rw++yl XP_024995020.1 28 SWSKEEDDILRKQIGIHGTNNWAIIASKFE-KKTTRQCRRRWFTYL 72 6***************************.9**********97 PP
2	Myb_DNA-binding	43.6	6.9e-14	78	119	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +g WT+eEd +l +a k +G++ W+ Ia+ + gRt++ +k+r+ XP_024995020.1 78 KGGWTPEEDIILCEAQKIFGNR-WTEIAKVVS-GRTDNAVKNRF 119 688*****************.*****.********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MKKKACDGNN SDKGGGDDLK QKERHLVSWS KEEDDILRKQ IGIHGTNNWA IIASKFEKKT 60 TRQCRRRWFT YLNSDFKKGG WTPEEDIILC EAQKIFGNRW TEIAKVVSGR TDNAVKNRFS 120 ILCKRKAKHE ASSNENNAAE VNANNKRTMF DNREDTEGIL ETSMHPMKLR RKHIAAATED 180 CNLVGLVGDS RTVDQKRRPP FVVLVQNCDN TNTSTAQIHA SSKKALIDEA SSGIRVEGTT 240 FKKDDPKIVA LMQQAELLNS LASEVNIEKT DQSFKSAWKA VQDFLNHTKE SDKLRFHISD 300 MEFQLENFKI LVEDIRSCRD DNQRFWSQAD VYQGSPDSSE YGTMSSIPSH INEKTKMAED 360 LCKVEPRPSR PIHPNNLVDD RNIEEYDAAA HQDIIPSSSK LNDDVRGVCP LSNSEFSSPL 420 QVTPLFRSMA EGILSPQFSE SEKHFLLKTL GMEPTTPNPT ARTSQSPPCK RALLHCL

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MKKKACDGNN SDKGGGDDLK QKERHLVSWS KEEDDILRKQ IGIHGTNNWA IIASKFEKKT  60
TRQCRRRWFT YLNSDFKKGG WTPEEDIILC EAQKIFGNRW TEIAKVVSGR TDNAVKNRFS  120
ILCKRKAKHE ASSNENNAAE VNANNKRTMF DNREDTEGIL ETSMHPMKLR RKHIAAATED  180
CNLVGLVGDS RTVDQKRRPP FVVLVQNCDN TNTSTAQIHA SSKKALIDEA SSGIRVEGTT  240
FKKDDPKIVA LMQQAELLNS LASEVNIEKT DQSFKSAWKA VQDFLNHTKE SDKLRFHISD  300
MEFQLENFKI LVEDIRSCRD DNQRFWSQAD VYQGSPDSSE YGTMSSIPSH INEKTKMAED  360
LCKVEPRPSR PIHPNNLVDD RNIEEYDAAA HQDIIPSSSK LNDDVRGVCP LSNSEFSSPL  420
QVTPLFRSMA EGILSPQFSE SEKHFLLKTL GMEPTTPNPT ARTSQSPPCK RALLHCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14350.1	1e-141	MYB family protein