PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994959.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 321aa MW: 35924.7 Da PI: 5.4999

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994959.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.7	4.4e-13	144	190	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L +llP + kK++Ka++Le A +YI++Lq XP_024994959.1 144 DHVLAERKRREKLAQRFISLSSLLPDL-----KKMDKATVLEDAANYIQELQ 190 6889*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MDMSSAWLPE LEMQDQGFMN QYQMNKPYHH LMDDFSVDSF SSESYTENPS FIDQSFQTPK 60 NVEEPSNIKQ LSSYKKANSI NKKFTPTEKP KPKLVSDTPN PFTISFGDIK PKDEILTFSD 120 SFGCTAAGTK KVPTMIRNPI QVQDHVLAER KRREKLAQRF ISLSSLLPDL KKMDKATVLE 180 DAANYIQELQ GRVKELEGSS GLKRKSLHES VISAKRSRLS CSDDDGSSSN EANFEESSSP 240 CNPEIEVRMS GCSLLIEIYS RNNCTSLVKV LSEMQKLGLS VISSSTMPFA DTTLLITVVA 300 QKNDDFVMSS TDLVKNLQLA I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	154	ERKRRE
2	150	155	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	4e-39	bHLH family protein