PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024994924.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 256aa MW: 29520.7 Da PI: 4.9121 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.3 | 1.5e-12 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ +Ed +l +++ +G +W++ + g R++k+c++rw +yl XP_024994924.1 11 KGAWSDDEDNKLRAYINIYGHWNWALLTKFAGVSRSGKSCRLRWVNYL 58 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 53.3 | 6.5e-17 | 65 | 109 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g++T+ Ed ++ d++++lG++ W++Ia ++ gR+++++k+rw+++l XP_024994924.1 65 GNFTEAEDNIIMDLHNKLGNK-WSAIATNLP-GRSDNEIKNRWNTHL 109 89*******************.*********.************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence |
MVKSKKNGMK KGAWSDDEDN KLRAYINIYG HWNWALLTKF AGVSRSGKSC RLRWVNYLRP 60 NIKHGNFTEA EDNIIMDLHN KLGNKWSAIA TNLPGRSDNE IKNRWNTHLK RQAQKEHIVL 120 ENQDDNETNK VNEANPQENI VETTNLKLLQ EVEILRERSS SESPSIDRLS SHSSSSWDYA 180 VSSDVTQQPL DYEPTTNFWT DPFISDDDNI ISSSDHLFTP MDLVVDYISN GYSQDMVMAN 240 EFLWSALDLC NEPFLF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 8e-46 | MYB family protein |