PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024994880.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family B3
Protein Properties Length: 397aa    MW: 44670.8 Da    PI: 8.7932
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024994880.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.73.1e-11251031699
                     EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     l lp  f++++ +k   +kt +l++ +g  sW++k+  +k ++ y +++GW++ +k+ +L+  D+vv +l++   f++ v +f++
  XP_024994880.1  25 LALPTAFVKRYLEK--IPKTPILKTATGeSSWRLKI--KKIGEDYCFSDGWEKLAKDAQLRIMDIVVVSLID--PFTFEVAFFDA 103
                     78*********534..56788999977769******..*******************************987..77778888876 PP
2B351.32.1e-16146230189
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+kv   s  + +  ++lp kf+++ +++++++  ++++d +g++W + l ++k+ +r+ l++GW+ F +  +L egD+++Fk++++++
  XP_024994880.1 146 FQKVI--SEKSHRYTMTLPQKFVKAAELENRSG--IRMKDHEGKEWIMGLLVEKYHNRHSLSSGWSLFRQYYNLSEGDICLFKFIKEEG 230
                     66766..66677778********9999998776..************************************************998543 PP
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    
MTTESSEEGP PSFFKVVRCP SAPHLALPTA FVKRYLEKIP KTPILKTATG ESSWRLKIKK  60
IGEDYCFSDG WEKLAKDAQL RIMDIVVVSL IDPFTFEVAF FDANGCDKDL PLNNTKFSGD  120
ADDVDEVMSD EEDDGDEVMP NENLCFQKVI SEKSHRYTMT LPQKFVKAAE LENRSGIRMK  180
DHEGKEWIMG LLVEKYHNRH SLSSGWSLFR QYYNLSEGDI CLFKFIKEEG VLSLAQVLKN  240
KKAGKQENGN RKETPANMEG VKRKRGRPRV EKPGNGNGGG VKVKSEDEAE VIKRKRGRPP  300
LQKHRDGGVK IENQSEVVKR KRGRPRVEGK IKIEDGDGDG DGDCDCDGDG SVVKIKVEKG  360
GFSGVEVKTE TETEVAAVKR KRGRPPLDRS KQRVIYF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293321KRKRGRPPLQKHRDGGVKIENQSEVVKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.13e-13B3 family protein