PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024994878.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family B3
Protein Properties Length: 426aa    MW: 48030.7 Da    PI: 8.5213
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024994878.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.63.5e-11251031699
                     EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     l lp  f++++ +k   +kt +l++ +g  sW++k+  +k ++ y +++GW++ +k+ +L+  D+vv +l++   f++ v +f++
  XP_024994878.1  25 LALPTAFVKRYLEK--IPKTPILKTATGeSSWRLKI--KKIGEDYCFSDGWEKLAKDAQLRIMDIVVVSLID--PFTFEVAFFDA 103
                     78*********534..56788999977769******..*******************************987..77778888876 PP
2B351.12.4e-16175259189
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+kv   s  + +  ++lp kf+++ +++++++  ++++d +g++W + l ++k+ +r+ l++GW+ F +  +L egD+++Fk++++++
  XP_024994878.1 175 FQKVI--SEKSHRYTMTLPQKFVKAAELENRSG--IRMKDHEGKEWIMGLLVEKYHNRHSLSSGWSLFRQYYNLSEGDICLFKFIKEEG 259
                     66766..66677778********9999998776..************************************************998543 PP
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    
MTTESSEEGP PSFFKVVRCP SAPHLALPTA FVKRYLEKIP KTPILKTATG ESSWRLKIKK  60
IGEDYCFSDG WEKLAKDAQL RIMDIVVVSL IDPFTFEVAF FDANGCDKDL PLNNTSWVYL  120
SLSVYLYCTI IKIKWVLNDG SLAQEFSGDA DDVDEVMSDE EDDGDEVMPN ENLCFQKVIS  180
EKSHRYTMTL PQKFVKAAEL ENRSGIRMKD HEGKEWIMGL LVEKYHNRHS LSSGWSLFRQ  240
YYNLSEGDIC LFKFIKEEGV LSLAQVLKNK KAGKQENGNR KETPANMEGV KRKRGRPRVE  300
KPGNGNGGGV KVKSEDEAEV IKRKRGRPPL QKHRDGGVKI ENQSEVVKRK RGRPRVEGKI  360
KIEDGDGDGD GDCDCDGDGS VVKIKVEKGG FSGVEVKTET ETEVAAVKRK RGRPPLDRSK  420
QRVIYF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322350KRKRGRPPLQKHRDGGVKIENQSEVVKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-10B3 family protein