PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024994853.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HSF
Protein Properties Length: 476aa    MW: 52595.4 Da    PI: 4.6091
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024994853.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.51.6e-36371292103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y++++d+++++++sws+++nsfvv+d+ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  XP_024994853.1  37 FLVKTYDMVDDPSTDKVVSWSATNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKS 122
                     9********************999*****************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+ks+
  XP_024994853.1 123 IVRRKSA 129
                     ****985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    
MEARSYSNAA ASAPDAGSSA PPPAPPPMST VNAPPPFLVK TYDMVDDPST DKVVSWSATN  60
NSFVVWDPPE FARDLLPKYF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGQKHLL  120
KSIVRRKSAS GHNQQPPQPH AQSSSELVRL RQQQQTTDNQ MQSMVQRLQG MEQRQQQMMS  180
FLAKAVNSPG FLAHFVQQQN ESTRLITEGN KKRRYKEDGV VSNDHPSVAS SDGRIVKYHP  240
MMNDAAQAML KQIMKLDNAS PRLGTFSNSP DSYLVGDVSS EARSGSGVTL QEVNPPASGQ  300
SYLPAVTGVL SAPLEANSEV VATNQFPEAS SLVDGQEFPD VSELSCLQDM APNASVNISN  360
DYMQSEAQNR ALLDPNLVDE KLSLEIGSFS PDADMEWDSN LLIEMEKYLT AYDPSLDQFL  420
EQSPEVDTTD EMDSSPVDDH VMKGNESKPS ETECSRSQVQ QLTTQMGLLA SNSRKA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211216KKRRYK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.26e-86HSF family protein