PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024994851.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HSF
Protein Properties Length: 504aa    MW: 55754 Da    PI: 4.6231
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024994851.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.41.7e-36371292103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y++++d+++++++sws+++nsfvv+d+ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  XP_024994851.1  37 FLVKTYDMVDDPSTDKVVSWSATNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKS 122
                     9********************999*****************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+ks+
  XP_024994851.1 123 IVRRKSA 129
                     ****985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    
MEARSYSNAA ASAPDAGSSA PPPAPPPMST VNAPPPFLVK TYDMVDDPST DKVVSWSATN  60
NSFVVWDPPE FARDLLPKYF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGQKHLL  120
KSIVRRKSAS GHNQQPPQPH AQSSSVGACV EVGKFGLEEE VERLKRDKNV LMQELVRLRQ  180
QQQTTDNQMQ SMVQRLQGME QRQQQMMSFL AKAVNSPGFL AHFVQQQNES TRLITEGNKK  240
RRYKEDGVVS NDHPSVASSD GRIVKYHPMM NDAAQAMLKQ IMKLDNASPR LGTFSNSPDS  300
YLVGDVSSEA RSGSGVTLQE VNPPASGQSY LPAVTGVLSA PLEANSEVVA TNQFPEASSL  360
VDGQEFPDVS ELSCLQDMAP NASVNISNDY MQSEAQNRAL LDPNLVDEKL SLEIGSFSPD  420
ADMEWDSNLL IEMEKYLTAY DPSLDQFLEQ SPEVDTTDEM DSSPVDDHVM KGNESKPSET  480
ECSRSQVQQL TTQMGLLASN SRKA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239244KKRRYK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-112HSF family protein