PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024994825.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 213aa MW: 23540.7 Da PI: 6.4238 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.8 | 2.4e-08 | 12 | 56 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45 WT + d + +a ++ + +W+ Ia ++ g++ +++k+++ XP_024994825.1 12 WTRDQDRAFENALVAYPEEdskdRWENIATNVP-GKSVEEIKHHYE 56 *****************99**************.**********96 PP | |||||||
2 | Myb_DNA-binding | 45.1 | 2.3e-14 | 125 | 169 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky XP_024994825.1 125 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 169 7*******************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence |
MMADESARES IWTRDQDRAF ENALVAYPEE DSKDRWENIA TNVPGKSVEE IKHHYELLVD 60 DLNRIESGIV PVPCYSGSSD DSASHGGDDG NGTSKKGGNL GHHNSESTHG GKASKSDQER 120 RKGVAWTEDE HRLFLLGLEK YGKGDWRSIS RNFVVTRTPT QVASHAQKYF IRLNSMNRDR 180 RRSSIHDITS VNNGDTSVPQ AAITGQTNGS LAG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 2e-92 | MYB family protein |