PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024994824.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 296aa MW: 32003.3 Da PI: 7.1798 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.1 | 4.1e-08 | 12 | 56 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45 WT + d + +a ++ + +W+ Ia ++ g++ +++k+++ XP_024994824.1 12 WTRDQDRAFENALVAYPEEdskdRWENIATNVP-GKSVEEIKHHYE 56 *****************99**************.**********96 PP | |||||||
2 | Myb_DNA-binding | 44.4 | 3.8e-14 | 125 | 169 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky XP_024994824.1 125 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 169 7*******************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence |
MMADESARES IWTRDQDRAF ENALVAYPEE DSKDRWENIA TNVPGKSVEE IKHHYELLVD 60 DLNRIESGIV PVPCYSGSSD DSASHGGDDG NGTSKKGGNL GHHNSESTHG GKASKSDQER 120 RKGVAWTEDE HRLFLLGLEK YGKGDWRSIS RNFVVTRTPT QVASHAQKYF IRLNSMNRDR 180 RRSSIHDITS VNNGDTSVPQ AAITGQTNGS LAGKSSKQFA QVTADPPSYT VSMYGGTTVG 240 QPVGLPLVSA VGTPVNLPPP SHMAYGGIRS LGQVVPGAPM NAGPMTYPMS HTSSHK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-109 | MYB family protein |