PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994780.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 366aa MW: 40904.6 Da PI: 6.4184

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994780.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.8	2.3e-14	183	229	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L XP_024994780.1 183 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 229 79***********************9.....8**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MCSKREEQEP VEDQEQELAG DHHHQDFQRF QEHSSSIVQQ IQHQNMGIND YSYTSSSEVS 60 PILHPQQQPW MLPQVFHHHN TGYNTSDLHF PGGDHGTYLF PPPPPPPSSL SSYGGLVNRR 120 VPGGGLQFAY EGSTSSSDHH LRLISETLGQ MVQPGSMPFG LQAEMGKMTA QEIMDAKALA 180 ASKSHSEAER RRRERINNHL AKLRSLLPST TKTDKASLLA EVIQHVKELK RQTSIIAEQS 240 PVPTETDELI IDNTSDEDGN LVIRASLCCE DRTDLLPDLI KTLKALRLRT LKAEITTLGG 300 RVKNVLFITG DQDANSNNDT TNYSISMIQE AFKAVMEKTN GEHESSSGSV KRQRTNNINV 360 LDHRRT

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MCSKREEQEP VEDQEQELAG DHHHQDFQRF QEHSSSIVQQ IQHQNMGIND YSYTSSSEVS  60
PILHPQQQPW MLPQVFHHHN TGYNTSDLHF PGGDHGTYLF PPPPPPPSSL SSYGGLVNRR  120
VPGGGLQFAY EGSTSSSDHH LRLISETLGQ MVQPGSMPFG LQAEMGKMTA QEIMDAKALA  180
ASKSHSEAER RRRERINNHL AKLRSLLPST TKTDKASLLA EVIQHVKELK RQTSIIAEQS  240
PVPTETDELI IDNTSDEDGN LVIRASLCCE DRTDLLPDLI KTLKALRLRT LKAEITTLGG  300
RVKNVLFITG DQDANSNNDT TNYSISMIQE AFKAVMEKTN GEHESSSGSV KRQRTNNINV  360
LDHRRT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	194	ERRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	7e-90	bHLH family protein