PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024994560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | Trihelix | ||||||||
Protein Properties | Length: 409aa MW: 46626.8 Da PI: 6.8487 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 56.2 | 9.3e-18 | 22 | 112 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +Wt++e laLi+a+re++ +lrrg l+ ++W++v++ + +++ qC++k+e+l++ry+++k+++ + + st+ yf+ ++ XP_024994560.1 22 CWTQDEALALIQAYRERWYALRRGYLRTADWDAVAEEVgricPGAIPPKTSAQCRHKMEKLRQRYRAEKQRALSFpGGQFLSTWFYFEAMD 112 8*************************************77644444589**********************99985577889999999997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence |
MSATATAVSA AEKPVRRFPP PCWTQDEALA LIQAYRERWY ALRRGYLRTA DWDAVAEEVG 60 RICPGAIPPK TSAQCRHKME KLRQRYRAEK QRALSFPGGQ FLSTWFYFEA MDSMEKNGNG 120 SNPDEETQSG NDLNSSCIKI VSLKNNHESN TIVDSGYGGL NPGRGIRFKP VAADGNLVTI 180 ATRSNNFRVS NNYAAQEEDN NDEFEDGYYV ETPIGKNLGR THKLSSQNYA TRFQSDHHSN 240 DGVHLHPSNF QDLEHSGVRP RKFSKTSSNS NHGYWNENGQ DHDDVLGEDE VWMKKPKDRS 300 MDFKEKLGDR IDRNSGHHYF DSENGSNEFS REKRGIKQDD DSIGQIVSSI KLLADGFVKM 360 EKMKMDMVHE IEKMRMEAEM KRNELLLESQ KQIVEAFVKG LAENKKQQQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 2e-39 | Trihelix family protein |