PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994559.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 409aa MW: 46626.8 Da PI: 6.8487

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994559.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	56.2	9.3e-18	22	112	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +Wt++e laLi+a+re++ +lrrg l+ ++W++v++ + +++ qC++k+e+l++ry+++k+++ + + st+ yf+ ++ XP_024994559.1 22 CWTQDEALALIQAYRERWYALRRGYLRTADWDAVAEEVgricPGAIPPKTSAQCRHKMEKLRQRYRAEKQRALSFpGGQFLSTWFYFEAMD 112 8***********************************77644444589********************99985577889999999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MSATATAVSA AEKPVRRFPP PCWTQDEALA LIQAYRERWY ALRRGYLRTA DWDAVAEEVG 60 RICPGAIPPK TSAQCRHKME KLRQRYRAEK QRALSFPGGQ FLSTWFYFEA MDSMEKNGNG 120 SNPDEETQSG NDLNSSCIKI VSLKNNHESN TIVDSGYGGL NPGRGIRFKP VAADGNLVTI 180 ATRSNNFRVS NNYAAQEEDN NDEFEDGYYV ETPIGKNLGR THKLSSQNYA TRFQSDHHSN 240 DGVHLHPSNF QDLEHSGVRP RKFSKTSSNS NHGYWNENGQ DHDDVLGEDE VWMKKPKDRS 300 MDFKEKLGDR IDRNSGHHYF DSENGSNEFS REKRGIKQDD DSIGQIVSSI KLLADGFVKM 360 EKMKMDMVHE IEKMRMEAEM KRNELLLESQ KQIVEAFVKG LAENKKQQQ

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MSATATAVSA AEKPVRRFPP PCWTQDEALA LIQAYRERWY ALRRGYLRTA DWDAVAEEVG  60
RICPGAIPPK TSAQCRHKME KLRQRYRAEK QRALSFPGGQ FLSTWFYFEA MDSMEKNGNG  120
SNPDEETQSG NDLNSSCIKI VSLKNNHESN TIVDSGYGGL NPGRGIRFKP VAADGNLVTI  180
ATRSNNFRVS NNYAAQEEDN NDEFEDGYYV ETPIGKNLGR THKLSSQNYA TRFQSDHHSN  240
DGVHLHPSNF QDLEHSGVRP RKFSKTSSNS NHGYWNENGQ DHDDVLGEDE VWMKKPKDRS  300
MDFKEKLGDR IDRNSGHHYF DSENGSNEFS REKRGIKQDD DSIGQIVSSI KLLADGFVKM  360
EKMKMDMVHE IEKMRMEAEM KRNELLLESQ KQIVEAFVKG LAENKKQQQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-39	Trihelix family protein