PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994544.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CO-like

Protein Properties

Length: 449aa MW: 50287.7 Da PI: 6.1022

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994544.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.4	1.7e-09	17	60	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+++ +k+++++C ++ +lC++C + H+ H++v XP_024994544.1 17 ARACDNCIRKRARWYCAADDAFLCQSCDASVHSAnplarrHERV 60 578*****************************657888888876 PP
2	CCT	66.6	6.8e-23	396	439	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+a+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a XP_024994544.1 396 RQARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 439 99****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MVSSDKKLAN VVGGKTARAC DNCIRKRARW YCAADDAFLC QSCDASVHSA NPLARRHERV 60 RLKVASLKLS SLEKPAPPPW HHGFTKKPRT PRGGSHHKHA SRQTLKSEES SMSFNPLDLV 120 PEIGSDETTA VTSEEQLLYQ VPVFDPFAAE LCLSGNSTDV ARPVKQSEAT TPVDGDRHNG 180 SKMTFDLNNL NGLILPSDME LAEFAADVES LLGKGLDEES FAMEGLGLLD CREKDSDECL 240 ERVKVEEDHE MQCELVESEM EMMREPFQLS FDYDSPLWEE KDEKVAVEGG VGGGGGGGGD 300 HTGLMKDEGY HMDINIEKYD DETKKNRRIL KLDYEGIIAA WDEQRSPWTT GDRPELDPDD 360 CWPECMGGCG IMHHHHHPYG DMGMMAGNPA MLDGGRQARV SRYREKRRTR LFSKKIRYEV 420 RKLNAEKRPR MKGRFVKRAS SSGFPILGK

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MVSSDKKLAN VVGGKTARAC DNCIRKRARW YCAADDAFLC QSCDASVHSA NPLARRHERV  60
RLKVASLKLS SLEKPAPPPW HHGFTKKPRT PRGGSHHKHA SRQTLKSEES SMSFNPLDLV  120
PEIGSDETTA VTSEEQLLYQ VPVFDPFAAE LCLSGNSTDV ARPVKQSEAT TPVDGDRHNG  180
SKMTFDLNNL NGLILPSDME LAEFAADVES LLGKGLDEES FAMEGLGLLD CREKDSDECL  240
ERVKVEEDHE MQCELVESEM EMMREPFQLS FDYDSPLWEE KDEKVAVEGG VGGGGGGGGD  300
HTGLMKDEGY HMDINIEKYD DETKKNRRIL KLDYEGIIAA WDEQRSPWTT GDRPELDPDD  360
CWPECMGGCG IMHHHHHPYG DMGMMAGNPA MLDGGRQARV SRYREKRRTR LFSKKIRYEV  420
RKLNAEKRPR MKGRFVKRAS SSGFPILGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	407	423	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-102	CO-like family protein