PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994522.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HD-ZIP

Protein Properties

Length: 290aa MW: 34144.8 Da PI: 4.5357

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994522.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.5e-18	63	116	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q++ Le+ Fe+++++ +++ +LAk+l+L+ rqV +WFqNrRa+ k XP_024994522.1 63 KKRRLSVDQVQFLERSFEEENKLEPDRKIQLAKELNLQPRQVAIWFQNRRARCK 116 566899**********************************************99 PP
2	HD-ZIP_I/II	127.4	6e-41	62	153	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrls +qv++LE+sFeee+kLep+rK +la+eL+lqprqva+WFqnrRAR ktkqlEkdye L ++yd+lk+e + L+k++++L++e++ XP_024994522.1 62 EKKRRLSVDQVQFLERSFEEENKLEPDRKIQLAKELNLQPRQVAIWFQNRRARCKTKQLEKDYEILNSSYDKLKSEFDCLQKHNDKLKHEVE 153 69**************************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MEGGVVFEAL LQNQRLTFSS DGFDSPWISN SFQGEKTNTK KRLSEQEENS DEDYEKCFRP 60 TEKKRRLSVD QVQFLERSFE EENKLEPDRK IQLAKELNLQ PRQVAIWFQN RRARCKTKQL 120 EKDYEILNSS YDKLKSEFDC LQKHNDKLKH EVEMLKEKLH QREKGEKDSI PNEFPTEELD 180 SNAQEPKPHP ISIENWSNNE PKMVICKQEY ANSVSAKSDV IDSYSPDVNH SSFLEPCDSS 240 NVFENQSDFN QEEDNLTILR CPKIEYESYI DPNEGSLGYP IEDQPFWLWP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	119	RRARCKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	1e-41	HD-ZIP family protein