PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994512.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 572aa MW: 65077 Da PI: 4.6734

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994512.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.5	9.8e-08	405	441	14	55
HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++iN++f+ L +l+P++ +K++K++ L +++Y+k+L+ XP_024994512.1 405 NNINHRFSVLSSLVPSR-----GKVDKVSLLDDTIDYLKMLE 441 79************9.....9**************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence
MTAMENLRQK LAMAVKSIQW SYAIFWSISS TEPGVLTWCD GYYNGDIKTR KTIQAEEMND 60 DYDDNEDDDE VGLQRTEQLR QLYESLSAAA ETHQHEPQAR KPSAALSPED LSDAEWYFLV 120 CMTYEFSDGQ GLPGRTLAEN TSCWLSNAHF ADSKVFSRSL LAKSASIQTV VCFPYLEGIV 180 EFGITEKVLE EQNIIKQIKG FIFGAPPQKV LEIPLESCSG MLDRDLTDNN LDGFHEYDQN 240 LVTKSRNSPK SNLNHSLMVE DVNIGGFQSQ EQRWQLVDEE EEGEVSFYHN NSMGSSDCIS 300 QNLVSDPSDL WSDDDSRYQG VLSKIFKNTQ RLILGPHFRN CDFKESAFIS WKNYDGIEWK 360 GSCSQMLLKK VLYEVPKMHR NRLVRPCDEN GILDQLQKLE ADDANNINHR FSVLSSLVPS 420 RGKVDKVSLL DDTIDYLKML ERRVEALQSN KHVGDKENKK SQDLQERTSD NYAIKRKASC 480 DLEDLQEECL SDCITVSVIE KDVAIEIQCR WRDNMMVQVF DAISSLNLES HSVHSSIADG 540 ILTLSIESKL KSCTTLTAKM IRQALQRVIG RH

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence

MTAMENLRQK LAMAVKSIQW SYAIFWSISS TEPGVLTWCD GYYNGDIKTR KTIQAEEMND  60
DYDDNEDDDE VGLQRTEQLR QLYESLSAAA ETHQHEPQAR KPSAALSPED LSDAEWYFLV  120
CMTYEFSDGQ GLPGRTLAEN TSCWLSNAHF ADSKVFSRSL LAKSASIQTV VCFPYLEGIV  180
EFGITEKVLE EQNIIKQIKG FIFGAPPQKV LEIPLESCSG MLDRDLTDNN LDGFHEYDQN  240
LVTKSRNSPK SNLNHSLMVE DVNIGGFQSQ EQRWQLVDEE EEGEVSFYHN NSMGSSDCIS  300
QNLVSDPSDL WSDDDSRYQG VLSKIFKNTQ RLILGPHFRN CDFKESAFIS WKNYDGIEWK  360
GSCSQMLLKK VLYEVPKMHR NRLVRPCDEN GILDQLQKLE ADDANNINHR FSVLSSLVPS  420
RGKVDKVSLL DDTIDYLKML ERRVEALQSN KHVGDKENKK SQDLQERTSD NYAIKRKASC  480
DLEDLQEECL SDCITVSVIE KDVAIEIQCR WRDNMMVQVF DAISSLNLES HSVHSSIADG  540
ILTLSIESKL KSCTTLTAKM IRQALQRVIG RH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63650.1	1e-139	bHLH family protein