PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994485.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 367aa MW: 41824.1 Da PI: 8.7737

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994485.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.8	1.1e-16	17	107	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +Wt++e l+Liea+re++ +l r+ l+ p+W++v++k+ + +++ qC++k+e+l++r++++k++++ + s++ yf+ +e XP_024994485.1 17 CWTRDEALVLIEAYRERWYALHRAFLRNPDWDAVAEKVttscPDVTPPKTSAQCRHKMEKLRQRHRAEKQRASAFpGGRFFSSWFYFEAME 107 8***********************************8877778889999******************99874466778999999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MSTAVAVKPV RKFPPPCWTR DEALVLIEAY RERWYALHRA FLRNPDWDAV AEKVTTSCPD 60 VTPPKTSAQC RHKMEKLRQR HRAEKQRASA FPGGRFFSSW FYFEAMEAME NGPNAETGND 120 NQTNTEINNA NAIGTPVLDH QGLNPGRGIR IKPLAVQNLV TLAASSTNHK PDFDSRVSNH 180 NSSYMNNWSN QEDENEDGYF VDSTINETSI HPGYKNHKNS PFTGGIRVKP LIISHPDPRP 240 RKFSKVVHDH EVDDDGEMWI KVPKNTNLFQ GNHQNDSSWN PSLNQGKKRG NVGIQEVVSS 300 IKLLGDGFMK MEKMKIDMAR EIERMRMETE MKRNQLILES QKQIVDAFVN GLIEIRKQPR 360 TETVADS

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MSTAVAVKPV RKFPPPCWTR DEALVLIEAY RERWYALHRA FLRNPDWDAV AEKVTTSCPD  60
VTPPKTSAQC RHKMEKLRQR HRAEKQRASA FPGGRFFSSW FYFEAMEAME NGPNAETGND  120
NQTNTEINNA NAIGTPVLDH QGLNPGRGIR IKPLAVQNLV TLAASSTNHK PDFDSRVSNH  180
NSSYMNNWSN QEDENEDGYF VDSTINETSI HPGYKNHKNS PFTGGIRVKP LIISHPDPRP  240
RKFSKVVHDH EVDDDGEMWI KVPKNTNLFQ GNHQNDSSWN PSLNQGKKRG NVGIQEVVSS  300
IKLLGDGFMK MEKMKIDMAR EIERMRMETE MKRNQLILES QKQIVDAFVN GLIEIRKQPR  360
TETVADS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	7e-41	Trihelix family protein