PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024994395.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 266aa MW: 30501.8 Da PI: 4.4612 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.9 | 1.1e-13 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l +++++G +W + ++ g R++k+c++rw +yl XP_024994395.1 14 KGAWSEDEDNKLRAYIQRYGHWNWGLLPKFAGVSRSGKSCRLRWMNYL 61 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 58.9 | 1.1e-18 | 68 | 112 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g++T+eEd+l +d++++lG++ W++Ia++++ gR+++++k+rw+++l XP_024994395.1 68 GNFTKEEDDLVIDLHNKLGNK-WSAIASKLP-GRSDNEIKNRWNTHL 112 89*******************.*********.************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence |
MVKASCYDKN GVKKGAWSED EDNKLRAYIQ RYGHWNWGLL PKFAGVSRSG KSCRLRWMNY 60 LRPNMKHGNF TKEEDDLVID LHNKLGNKWS AIASKLPGRS DNEIKNRWNT HLKKRALISD 120 HQTVAENEHI GTLESDDQAN VNENPFKEID VELDQQEVDS LLAEILSDES PSSSSRTELS 180 SYPDYGVLSD LWPQTFQDEV VGNFWTEPFL PDNGGIGPSS ETLLSPFNFV NDFISQPPSC 240 QDMMMTNEFY WSTLDTYVDD NMDFLN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 5e-51 | MYB family protein |