PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024994351.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HSF
Protein Properties Length: 334aa    MW: 37832.7 Da    PI: 4.7692
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024994351.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.22.6e-33161082103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k ye+++d++++ lisws  ++sf+v++e ef++++Lp+yFkh+ faSF RQLn+YgF+k ++++         weF+++ F k++k+ll +
  XP_024994351.1  16 FLLKCYEMVDDPSTDALISWSLANDSFIVWNEAEFTSELLPRYFKHNTFASFQRQLNIYGFRKNDTDR---------WEFANDGFIKDQKHLLMS 101
                     9********************889***************************************99988.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+rkk +
  XP_024994351.1 102 INRKKAS 108
                     ****975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MVKKSTENGG LLIPPFLLKC YEMVDDPSTD ALISWSLAND SFIVWNEAEF TSELLPRYFK  60
HNTFASFQRQ LNIYGFRKND TDRWEFANDG FIKDQKHLLM SINRKKASPV TAQQNVTKPK  120
MINVSANEGN KYAGLWKEVE SLKTDKNTLM QELVKQRQHQ KTSQAKMLVL REQLKGMEQN  180
QQQMLSFIVV AMQSPGFLAK PIENNRLKSE PISKTILKPN EPIGLPCEGA IVKYQPPSEE  240
PDSNSQDSVE LDLTSDEVED LFENMDLMSG LPLNERTVST ENYDPFIFHD LSDGDNMLDQ  300
LLSFSENKTT KLHSDNLTST GYGSDGIGSL GSIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-69HSF family protein