PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994342.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 380aa MW: 43267.6 Da PI: 6.5145

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994342.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.7	3.7e-24	73	160	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt...sessstcpyfdqle 86 W k+e+++Li +r e+++ ++++k++k+lW+++s kmre+gf rsp++C++kw+nl k++kk k++e++++ + s++++++++e XP_024994342.1 73 WVKEETRTLIILRHEIDSLFNTSKSNKHLWDQISFKMREKGFDRSPTMCTDKWRNLLKEFKKAKQHENGGNhngYSANSKMQFYKEVE 160 *******************************************************************998522222345677777765 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MFTQAINFCP ASIQTNMMME STTTTTPTPH HHQTQLIVAA PATSSEENTI KSSAAATPTV 60 SASPPVKKRA ETWVKEETRT LIILRHEIDS LFNTSKSNKH LWDQISFKMR EKGFDRSPTM 120 CTDKWRNLLK EFKKAKQHEN GGNHNGYSAN SKMQFYKEVE EIIRDRNKNC KVDSFMHFSD 180 KGVEDTSIAF GPVEDDARGA LNLERRLDQE GHPLAITAAD TMAATGVSPW NWRETPGNGD 240 QNNSYGGRVI SVKLGDYTRR IGIDGSSEAI KETIKSAFRL RTNRAFWLED VDNIVRTLDR 300 DMPLGNYSLH VDEGLMIKVC LFEEPDHVPV HTEDKIFYTE DDFRDFLSRR GWICLREYNG 360 YRNVDIMDEL CPGAIYRGIS

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MFTQAINFCP ASIQTNMMME STTTTTPTPH HHQTQLIVAA PATSSEENTI KSSAAATPTV  60
SASPPVKKRA ETWVKEETRT LIILRHEIDS LFNTSKSNKH LWDQISFKMR EKGFDRSPTM  120
CTDKWRNLLK EFKKAKQHEN GGNHNGYSAN SKMQFYKEVE EIIRDRNKNC KVDSFMHFSD  180
KGVEDTSIAF GPVEDDARGA LNLERRLDQE GHPLAITAAD TMAATGVSPW NWRETPGNGD  240
QNNSYGGRVI SVKLGDYTRR IGIDGSSEAI KETIKSAFRL RTNRAFWLED VDNIVRTLDR  300
DMPLGNYSLH VDEGLMIKVC LFEEPDHVPV HTEDKIFYTE DDFRDFLSRR GWICLREYNG  360
YRNVDIMDEL CPGAIYRGIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-156	Trihelix family protein