PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994340.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 388aa MW: 44078.5 Da PI: 6.65

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994340.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.6	3.8e-24	73	160	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt...sessstcpyfdqle 86 W k+e+++Li +r e+++ ++++k++k+lW+++s kmre+gf rsp++C++kw+nl k++kk k++e++++ + s++++++++e XP_024994340.1 73 WVKEETRTLIILRHEIDSLFNTSKSNKHLWDQISFKMREKGFDRSPTMCTDKWRNLLKEFKKAKQHENGGNhngYSANSKMQFYKEVE 160 *******************************************************************998522222345677777765 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MFTQAINFCP ASIQTNMMME STTTTTPTPH HHQTQLIVAA PATSSEENTI KSSAAATPTV 60 SASPPVKKRA ETWVKEETRT LIILRHEIDS LFNTSKSNKH LWDQISFKMR EKGFDRSPTM 120 CTDKWRNLLK EFKKAKQHEN GGNHNGYSAN SKMQFYKEVE EIIRDRNKNC KVDSFMHFSD 180 KGVEDTSIAF GPVEGMSNFS STNDARGALN LERRLDQEGH PLAITAADTM AATGVSPWNW 240 RETPGNGDQN NSYGGRVISV KLGDYTRRIG IDGSSEAIKE TIKSAFRLRT NRAFWLEDVD 300 NIVRTLDRDM PLGNYSLHVD EGLMIKVCLF EEPDHVPVHT EDKIFYTEDD FRDFLSRRGW 360 ICLREYNGYR NVDIMDELCP GAIYRGIS

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MFTQAINFCP ASIQTNMMME STTTTTPTPH HHQTQLIVAA PATSSEENTI KSSAAATPTV  60
SASPPVKKRA ETWVKEETRT LIILRHEIDS LFNTSKSNKH LWDQISFKMR EKGFDRSPTM  120
CTDKWRNLLK EFKKAKQHEN GGNHNGYSAN SKMQFYKEVE EIIRDRNKNC KVDSFMHFSD  180
KGVEDTSIAF GPVEGMSNFS STNDARGALN LERRLDQEGH PLAITAADTM AATGVSPWNW  240
RETPGNGDQN NSYGGRVISV KLGDYTRRIG IDGSSEAIKE TIKSAFRLRT NRAFWLEDVD  300
NIVRTLDRDM PLGNYSLHVD EGLMIKVCLF EEPDHVPVHT EDKIFYTEDD FRDFLSRRGW  360
ICLREYNGYR NVDIMDELCP GAIYRGIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-154	Trihelix family protein