PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994339.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 390aa MW: 44248.7 Da PI: 6.65

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994339.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.6	3.8e-24	73	160	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt...sessstcpyfdqle 86 W k+e+++Li +r e+++ ++++k++k+lW+++s kmre+gf rsp++C++kw+nl k++kk k++e++++ + s++++++++e XP_024994339.1 73 WVKEETRTLIILRHEIDSLFNTSKSNKHLWDQISFKMREKGFDRSPTMCTDKWRNLLKEFKKAKQHENGGNhngYSANSKMQFYKEVE 160 *******************************************************************998522222345677777765 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MFTQAINFCP ASIQTNMMME STTTTTPTPH HHQTQLIVAA PATSSEENTI KSSAAATPTV 60 SASPPVKKRA ETWVKEETRT LIILRHEIDS LFNTSKSNKH LWDQISFKMR EKGFDRSPTM 120 CTDKWRNLLK EFKKAKQHEN GGNHNGYSAN SKMQFYKEVE EIIRDRNKNC KVDSFMHFSD 180 KGVEDTSIAF GPVEGMSNFS STNDARGALN LERRLDQEGH PLAITAADTM AATGVSPWNW 240 RETPGNVAGD QNNSYGGRVI SVKLGDYTRR IGIDGSSEAI KETIKSAFRL RTNRAFWLED 300 VDNIVRTLDR DMPLGNYSLH VDEGLMIKVC LFEEPDHVPV HTEDKIFYTE DDFRDFLSRR 360 GWICLREYNG YRNVDIMDEL CPGAIYRGIS

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MFTQAINFCP ASIQTNMMME STTTTTPTPH HHQTQLIVAA PATSSEENTI KSSAAATPTV  60
SASPPVKKRA ETWVKEETRT LIILRHEIDS LFNTSKSNKH LWDQISFKMR EKGFDRSPTM  120
CTDKWRNLLK EFKKAKQHEN GGNHNGYSAN SKMQFYKEVE EIIRDRNKNC KVDSFMHFSD  180
KGVEDTSIAF GPVEGMSNFS STNDARGALN LERRLDQEGH PLAITAADTM AATGVSPWNW  240
RETPGNVAGD QNNSYGGRVI SVKLGDYTRR IGIDGSSEAI KETIKSAFRL RTNRAFWLED  300
VDNIVRTLDR DMPLGNYSLH VDEGLMIKVC LFEEPDHVPV HTEDKIFYTE DDFRDFLSRR  360
GWICLREYNG YRNVDIMDEL CPGAIYRGIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-153	Trihelix family protein