PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024994309.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 256aa MW: 29437.4 Da PI: 4.4449 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47 | 6.1e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l +v+++G +W++ ++ g+ R++k+c++rw +yl XP_024994309.1 14 KGAWSEDEDNKLRAYVQRYGHWNWRLLPKFAGLSRSGKSCRLRWVNYL 61 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.7e-17 | 68 | 112 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g++T+eE++ +v+++++lG++ W+ a++++ gR+++++k+rw+++l XP_024994309.1 68 GNFTKEEEDMIVELHNKLGNK-WSEMAAYLP-GRSDNEIKNRWHTHL 112 89*******************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence |
MVKTPSFDKN GVKKGAWSED EDNKLRAYVQ RYGHWNWRLL PKFAGLSRSG KSCRLRWVNY 60 LRPDLKHGNF TKEEEDMIVE LHNKLGNKWS EMAAYLPGRS DNEIKNRWHT HLKKRAQKDQ 120 TELENEHIGT VEPDQTNNTE ENLVQNSDLQ LQQDIEILLA ESPLSSSTTN LSWLNGFDSA 180 GSSDDIPQLT DYAPVGDFWT DPFFSDNDSI ISSSDNLFLP SDLVYTASCQ DMIVADDEFL 240 WSSLDSYLEY NGQFIN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 2e-52 | MYB family protein |