PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994308.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 414aa MW: 46402.6 Da PI: 4.7508

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994308.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	99.2	6e-31	58	197	1	128
NAM 1 lppGfrFhPtdeelvveyLkkk.vegkk....lelee....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sg 81 lp+G++F+P d+e++++ L+k+ v+g + ++ e v ++ +i++++P++Lp v+++ + +fF+++ k+y+tg+rk+r+++ + XP_024994308.1 58 LPQGVKFDPLDQEIIWHLLAKSgVSGFPphpfID--EfiptVYEDDGICYTHPQKLP-GVQQDGSVSHFFHRAIKAYNTGTRKRRKIHgddfgDF 149 799**********9999887566666755422..22232455557******.677788899**************8665554466 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tg++k+v+ +g + g+kk++v+y + k+ekt+Wvmh+y+l XP_024994308.1 150 RWHKTGRTKPVVL-DGIQRGCKKIMVLYvsPVKGGKAEKTNWVMHQYHL 197 7********.99********6544777888*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MAGPSWLVDS NRIATKIRSA SGTCDPQNIN WKSNPTKSCP NCHHIVDNSD VNQAWPGLPQ 60 GVKFDPLDQE IIWHLLAKSG VSGFPPHPFI DEFIPTVYED DGICYTHPQK LPGVQQDGSV 120 SHFFHRAIKA YNTGTRKRRK IHGDDFGDFR WHKTGRTKPV VLDGIQRGCK KIMVLYVSPV 180 KGGKAEKTNW VMHQYHLGTG EDEKEGEYVI SKVFYQQQSQ SKTPNEKDEE IILEEIINAP 240 IVKVDPVTPK SVTPEPPRAE RRVPDMGLGQ GPTEIYADPA QVGDHEDHVT EENGVSDELG 300 TNDNGEAGEE PKWWDSESQY LLDSQQLVEG LSLCDEFLQS QSPQRDVENR ESNRKPSLAD 360 YAQLGPENLK KDLEECQGLA FDPANLELDT PPDFRLSQLE FGSQESFLAW GGCK

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MAGPSWLVDS NRIATKIRSA SGTCDPQNIN WKSNPTKSCP NCHHIVDNSD VNQAWPGLPQ  60
GVKFDPLDQE IIWHLLAKSG VSGFPPHPFI DEFIPTVYED DGICYTHPQK LPGVQQDGSV  120
SHFFHRAIKA YNTGTRKRRK IHGDDFGDFR WHKTGRTKPV VLDGIQRGCK KIMVLYVSPV  180
KGGKAEKTNW VMHQYHLGTG EDEKEGEYVI SKVFYQQQSQ SKTPNEKDEE IILEEIINAP  240
IVKVDPVTPK SVTPEPPRAE RRVPDMGLGQ GPTEIYADPA QVGDHEDHVT EENGVSDELG  300
TNDNGEAGEE PKWWDSESQY LLDSQQLVEG LSLCDEFLQS QSPQRDVENR ESNRKPSLAD  360
YAQLGPENLK KDLEECQGLA FDPANLELDT PPDFRLSQLE FGSQESFLAW GGCK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25580.1	1e-179	NAC family protein