PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994224.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

GeBP

Protein Properties

Length: 387aa MW: 43679.4 Da PI: 4.5101

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994224.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	112.8	2.1e-35	171	266	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiW 96 ++r+ws++De++lLqG+id++ k+g sp +d+d+fy+f +s+ ++sksql eKirrLKkKf+ +++k +++g++ +f k+h++k fe+skkiW XP_024994224.1 171 MKRVWSDDDELLLLQGFIDYQLKKGCSPLSDMDGFYQFTMDSLPGNASKSQLYEKIRRLKKKFRVNSEKvSSNGEDHVFPKPHERKLFEISKKIW 265 68***************************************************************997899******************** PP DUF573 97 g 97 g XP_024994224.1 266 G 266 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MASKRSTPLD DPPSASSDDD ETEDEQEILT HKTNEESSTE EEEEEEEEEE ESEEEPQIQN 60 PLENPKIKNP NSKVVESSSE EETPTHVETS VENPKTLTPK SSSVFDFDAD PDFKSPTASD 120 FAIKPSKKIN VHETPEKTPA SKRLFSESDL KEKKKIKVSN GDVDDEKKSV MKRVWSDDDE 180 LLLLQGFIDY QLKKGCSPLS DMDGFYQFTM DSLPGNASKS QLYEKIRRLK KKFRVNSEKV 240 SSNGEDHVFP KPHERKLFEI SKKIWGIDGC ESVGGSNANV KSKTKTKPKI EVKEEEDEDD 300 GREAKIQDFE TLYPYLNAGL NLQVSSSLNF PTGVVHLIKE NLSLIGEAKA KELDEKWEAL 360 FDNEIMLRKR RIALLSNVAD LGTSLGK

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MASKRSTPLD DPPSASSDDD ETEDEQEILT HKTNEESSTE EEEEEEEEEE ESEEEPQIQN  60
PLENPKIKNP NSKVVESSSE EETPTHVETS VENPKTLTPK SSSVFDFDAD PDFKSPTASD  120
FAIKPSKKIN VHETPEKTPA SKRLFSESDL KEKKKIKVSN GDVDDEKKSV MKRVWSDDDE  180
LLLLQGFIDY QLKKGCSPLS DMDGFYQFTM DSLPGNASKS QLYEKIRRLK KKFRVNSEKV  240
SSNGEDHVFP KPHERKLFEI SKKIWGIDGC ESVGGSNANV KSKTKTKPKI EVKEEEDEDD  300
GREAKIQDFE TLYPYLNAGL NLQVSSSLNF PTGVVHLIKE NLSLIGEAKA KELDEKWEAL  360
FDNEIMLRKR RIALLSNVAD LGTSLGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	4e-25	GeBP family protein