PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024994195.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 323aa    MW: 37036 Da    PI: 5.6147
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024994195.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.5e-183784148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd  l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
   XP_024994195.1 37 RGPWTVEEDFALINYIAHHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 84
                     89********************************************97 PP
2Myb_DNA-binding51.32.7e-1690133146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_024994195.1  90 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 133
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MGDLKMNSSS SNSNSCIDMS GGEEDDQMNM MMDDLRRGPW TVEEDFALIN YIAHHGEGRW  60
NSLARCAGLK RTGKSCRLRW LNYLRPDVRR GNITLEEQLL ILELHSRWGN RWSKIAQHLP  120
GRTDNEIKNY WRTRVQKHAK QLKCDVNSKQ FKDTMRYLWM PRLAERIQAA STTTTTTRAS  180
PSTITTTNTT AYPLNQNNMD HTGTSQLVMP HSYNSDVGNN QINPGYATEN SGTTAVSPVS  240
DMTDCYYPIH PTQNQDFLQN NNQLGDEFDG SLISPSGYFN QEMDFEAMVE ENNQWSGRNS  300
GDFSDSLWNV EDILFLQRQF NNM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.16e-87MYB family protein