PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024994044.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 309aa MW: 35254.2 Da PI: 6.234 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.4 | 1.1e-17 | 86 | 139 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k XP_024994044.1 86 KKRRLNMEQVKTLERNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 139 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 131.2 | 3.9e-42 | 85 | 177 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr+++a+k+en++L++++++L++e+++ XP_024994044.1 85 EKKRRLNMEQVKTLERNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDTLKRQFEAVKAENDSLQSQNHKLHAEIMA 177 69**************************************************************************************99975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence |
MTCTGMAFFS NNFVLQTSQE DDHHAPPLLP PCTTTQDFSG VASFLGKRSM SFSGMNNMDA 60 CDQEGGNMNG EDELSDDGSQ LLAGEKKRRL NMEQVKTLER NFELGNKLEP ERKMQLARAL 120 GLQPRQIAIW FQNRRARWKT KQLEKDYDTL KRQFEAVKAE NDSLQSQNHK LHAEIMALKN 180 REPTELINLN IKETEGSCSN RSENSSEIKL DISRTPATDS SLSSHHQHHQ QQQPIPNLFP 240 ASNIDRPNTN NIVAHQLFHN SSSRPTDHQL HCQKLDQSTG IKEECFSNMF VGIEDQSGFW 300 PWLEQPQFN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 142 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-113 | HD-ZIP family protein |