PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024994044.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 309aa    MW: 35254.2 Da    PI: 6.234
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024994044.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41.1e-1786139356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  XP_024994044.1  86 KKRRLNMEQVKTLERNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 139
                     456899***********************************************9 PP

2HD-ZIP_I/II131.23.9e-4285177193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrl+ eqvk+LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr+++a+k+en++L++++++L++e+++
  XP_024994044.1  85 EKKRRLNMEQVKTLERNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDTLKRQFEAVKAENDSLQSQNHKLHAEIMA 177
                     69**************************************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MTCTGMAFFS NNFVLQTSQE DDHHAPPLLP PCTTTQDFSG VASFLGKRSM SFSGMNNMDA  60
CDQEGGNMNG EDELSDDGSQ LLAGEKKRRL NMEQVKTLER NFELGNKLEP ERKMQLARAL  120
GLQPRQIAIW FQNRRARWKT KQLEKDYDTL KRQFEAVKAE NDSLQSQNHK LHAEIMALKN  180
REPTELINLN IKETEGSCSN RSENSSEIKL DISRTPATDS SLSSHHQHHQ QQQPIPNLFP  240
ASNIDRPNTN NIVAHQLFHN SSSRPTDHQL HCQKLDQSTG IKEECFSNMF VGIEDQSGFW  300
PWLEQPQFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-113HD-ZIP family protein