PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024994043.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 314aa    MW: 35778.9 Da    PI: 6.234
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024994043.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-1786139356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  XP_024994043.1  86 KKRRLNMEQVKTLERNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 139
                     456899***********************************************9 PP

2HD-ZIP_I/II131.63e-4285175191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     ekkrrl+ eqvk+LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr+++a+k+en++L++++++L++e+
  XP_024994043.1  85 EKKRRLNMEQVKTLERNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDTLKRQFEAVKAENDSLQSQNHKLHAEI 175
                     69*************************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MTCTGMAFFS NNFVLQTSQE DDHHAPPLLP PCTTTQDFSG VASFLGKRSM SFSGMNNMDA  60
CDQEGGNMNG EDELSDDGSQ LLAGEKKRRL NMEQVKTLER NFELGNKLEP ERKMQLARAL  120
GLQPRQIAIW FQNRRARWKT KQLEKDYDTL KRQFEAVKAE NDSLQSQNHK LHAEIGILQI  180
MALKNREPTE LINLNIKETE GSCSNRSENS SEIKLDISRT PATDSSLSSH HQHHQQQQPI  240
PNLFPASNID RPNTNNIVAH QLFHNSSSRP TDHQLHCQKL DQSTGIKEEC FSNMFVGIED  300
QSGFWPWLEQ PQFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-110HD-ZIP family protein