PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024994024.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 336aa    MW: 38420.9 Da    PI: 6.6695
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024994024.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.4e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l ++++ +G+g+W+t ++  g+ R++k+c++rw +yl
   XP_024994024.1 14 KGPWTQEEDLKLTQYIQIHGPGNWRTLPKNSGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding55.21.6e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e +++++k lG++ W++Ia++++ gRt++++k++w+++
   XP_024994024.1  67 RGRFSFEEEETIIQLHKVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MGRSPCCDKS GLKKGPWTQE EDLKLTQYIQ IHGPGNWRTL PKNSGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHKVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRNG  120
IDPVTHRPRH DLLDMTSILN SASSNLSNLL NIQSLVNPQV LRLATLLASS SSIQQNNEFF  180
LNNHIAPMSQ NPNQQIASVT FTPSSRLPSN QLWDEAHHMQ KNNSQCFSEN MVNLNDQTSQ  240
ENLVPTCWTD DSIILPHYSD QFTSQASENS TFQLSNTENN NFNVDSIFPT PISSPTPLDS  300
ASIFINGSSS EDEIESYCRK HFKFEIPESF EFDDFM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.16e-88MYB family protein