PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024993925.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 574aa MW: 66862.2 Da PI: 9.4222

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024993925.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38.7	3.3e-12	1	96	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek..dgkwevtkleleHnHela 90 +Y++YA vGF++r s++k++ + g ++ + v k+gk++++ + ++++ ++++ + t+Cka+++ k + ++ ++++ + +HnH+l XP_024993925.1 1 MYRRYADIVGFDIRLSTQKTR-KGGIVKLKYVVRHKHGKPKKRLVDsvevdgHRRQVQNTNFKVTDCKASVRFKYIEgsQSSYRLYYFCPNHNHDLI 96 6************987765.6665555555678999999998889999888888899999*********999899***********995 PP

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence
MYRRYADIVG FDIRLSTQKT RKGGIVKLKY VVRHKHGKPK KRLVDSVEVD GHRRQVQNTN 60 FKVTDCKASV RFKYIEGSQS SYRLYYFCPN HNHDLIDDAD RILSRKSRQL SYDDKVMVHW 120 SARSNIGPAR SHKLQVCLKG GYDEVGSSVV DYKNFKRGLN NYIGDGDVQM VVNMLNDRRQ 180 YGTNFAFEYK IDNGRLVSMF WANELTRSNY AEFSDVMSFD ATYRFNKRSV VFGSGLITEE 240 TIQAYTWLLE SFLKVHGRQP TLVLTDQDAS IKEAIPVVFS DARHRLCMWH IMKKLPAKVL 300 NVLAHVIESS DIILNTNFKK RLLKLVWSVH LEPDEFEVKR ASLLNEFDLN THPWLEDVFE 360 MRTKFILSHD TAIDKQRNRQ RNEDHKTNTT TPTFKTNTLI EYHAAKVYTR AIFFKVQKEI 420 FKGYRCSSQW QVNSEMGFTV YTIRERKKHC STKLEFKVAQ SHSDDSIYCD CRHFEYYGTL 480 CRHVFTALDE GVIPVDVLRS RHISIGSDSR VDKLSNDVYL EVGQCLMNFK GDEDKITAFL 540 DNIRSWKSNM LSGVYEKLDF TNKDDVIQSL VGVP

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence

MYRRYADIVG FDIRLSTQKT RKGGIVKLKY VVRHKHGKPK KRLVDSVEVD GHRRQVQNTN  60
FKVTDCKASV RFKYIEGSQS SYRLYYFCPN HNHDLIDDAD RILSRKSRQL SYDDKVMVHW  120
SARSNIGPAR SHKLQVCLKG GYDEVGSSVV DYKNFKRGLN NYIGDGDVQM VVNMLNDRRQ  180
YGTNFAFEYK IDNGRLVSMF WANELTRSNY AEFSDVMSFD ATYRFNKRSV VFGSGLITEE  240
TIQAYTWLLE SFLKVHGRQP TLVLTDQDAS IKEAIPVVFS DARHRLCMWH IMKKLPAKVL  300
NVLAHVIESS DIILNTNFKK RLLKLVWSVH LEPDEFEVKR ASLLNEFDLN THPWLEDVFE  360
MRTKFILSHD TAIDKQRNRQ RNEDHKTNTT TPTFKTNTLI EYHAAKVYTR AIFFKVQKEI  420
FKGYRCSSQW QVNSEMGFTV YTIRERKKHC STKLEFKVAQ SHSDDSIYCD CRHFEYYGTL  480
CRHVFTALDE GVIPVDVLRS RHISIGSDSR VDKLSNDVYL EVGQCLMNFK GDEDKITAFL  540
DNIRSWKSNM LSGVYEKLDF TNKDDVIQSL VGVP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-38	FAR1 family protein