PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024993791.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

SBP

Protein Properties

Length: 846aa MW: 93860.3 Da PI: 7.2245

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024993791.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.4	5.6e-40	23	100	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dl+ ak+yhrrhkvC+ hsk++++lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+++ XP_024993791.1 23 VCQVDDCQTDLTGAKDYHRRHKVCNLHSKSTKALVGNVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNRRRRKTHP 100 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 846 aa Download sequence
MYSWEGKSGK KSKVGGATPN RAVCQVDDCQ TDLTGAKDYH RRHKVCNLHS KSTKALVGNV 60 MQRFCQQCSR FHALQEFDEG KRSCRRRLAG HNRRRRKTHP ENTINGVSLN DERSCSYLLV 120 SLLRILSNVQ SNTSEQSKDQ DLLSHLLKNL ASLAGTVNDK NSSGLLSGSQ CLQDAGTSSA 180 PPEKEPLQPV GETVNPSRLD MMHRGVLGTP DPCQITISSN NKAPTEANTV EATVGKMKLN 240 NIDLNMVYDD SQDCMEPTES FETPENTDNV PIWLRRHPHK SSPPQTSGNS GSTATQSPSS 300 SSGEAQSRTD RIVFKLFGKD PNELPIVLRN QILDWLLHSP TDIEGYIRPG CIILAIYLRM 360 DNSSWDELCY DLSSHLRKLL DASSNSFWRT GWVYTRVLDH VAFVCDGQIV LNTALPHKSH 420 RKSSILNITP IAVSASESTQ FSVKGFNISW STSRMLCVLE GSYLLQTSCS DLMEAADSLI 480 KHEDTQSLSF SCPIPHISGR GFIEIEDDSL SSSFFPFIVA EQDVCSEIRT LESDLDVVET 540 SDDTEREKKE IEARTRALEF VNEMGWLLHR SQLKVRLGSM DPSSDSFSFK RFRWLIEFSI 600 DHDWCAVVKK LLGIILNGAV ETAEHGSVEV ALVEVGLLHR AVRRNSNRMV SLLLNYHPEN 660 VSGSVLFRPD AAGPGGLTPL HIASGKDGSE SVLDALTDDP LLVGLDAWRN SRDSSGLSPY 720 DYASLRGHYN YIHLVQRKMN KKRSEKGHVV VDMPPTESPL FKVAAGFETE KGVVVTRAIS 780 SCSRCERKVA YYGGGRSSLA IYKPAMLSMV AIAAVCVCVA LLFKSSPQVM YVFQPFIWER 840 LKYGAS

Sequence ? help Back to Top

Protein Sequence Length: 846 aa Download sequence

MYSWEGKSGK KSKVGGATPN RAVCQVDDCQ TDLTGAKDYH RRHKVCNLHS KSTKALVGNV  60
MQRFCQQCSR FHALQEFDEG KRSCRRRLAG HNRRRRKTHP ENTINGVSLN DERSCSYLLV  120
SLLRILSNVQ SNTSEQSKDQ DLLSHLLKNL ASLAGTVNDK NSSGLLSGSQ CLQDAGTSSA  180
PPEKEPLQPV GETVNPSRLD MMHRGVLGTP DPCQITISSN NKAPTEANTV EATVGKMKLN  240
NIDLNMVYDD SQDCMEPTES FETPENTDNV PIWLRRHPHK SSPPQTSGNS GSTATQSPSS  300
SSGEAQSRTD RIVFKLFGKD PNELPIVLRN QILDWLLHSP TDIEGYIRPG CIILAIYLRM  360
DNSSWDELCY DLSSHLRKLL DASSNSFWRT GWVYTRVLDH VAFVCDGQIV LNTALPHKSH  420
RKSSILNITP IAVSASESTQ FSVKGFNISW STSRMLCVLE GSYLLQTSCS DLMEAADSLI  480
KHEDTQSLSF SCPIPHISGR GFIEIEDDSL SSSFFPFIVA EQDVCSEIRT LESDLDVVET  540
SDDTEREKKE IEARTRALEF VNEMGWLLHR SQLKVRLGSM DPSSDSFSFK RFRWLIEFSI  600
DHDWCAVVKK LLGIILNGAV ETAEHGSVEV ALVEVGLLHR AVRRNSNRMV SLLLNYHPEN  660
VSGSVLFRPD AAGPGGLTPL HIASGKDGSE SVLDALTDDP LLVGLDAWRN SRDSSGLSPY  720
DYASLRGHYN YIHLVQRKMN KKRSEKGHVV VDMPPTESPL FKVAAGFETE KGVVVTRAIS  780
SCSRCERKVA YYGGGRSSLA IYKPAMLSMV AIAAVCVCVA LLFKSSPQVM YVFQPFIWER  840
LKYGAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	SBP family protein