PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024993790.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

SBP

Protein Properties

Length: 962aa MW: 106459 Da PI: 6.7405

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024993790.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.2	6.6e-40	139	216	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dl+ ak+yhrrhkvC+ hsk++++lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+++ XP_024993790.1 139 VCQVDDCQTDLTGAKDYHRRHKVCNLHSKSTKALVGNVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNRRRRKTHP 216 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 962 aa Download sequence
MEAKFGGNPH HYYGPVVSDL KAVGKTSMEW DLNDWKWDGD LFAATPLNAI SSDCRSRQLF 60 PVTSGADANT GVSNSSSSCS DEGKRELEKR RRVVVLDEEE QVGDEVGALN LNLGGQMYSW 120 EGKSGKKSKV GGATPNRAVC QVDDCQTDLT GAKDYHRRHK VCNLHSKSTK ALVGNVMQRF 180 CQQCSRFHAL QEFDEGKRSC RRRLAGHNRR RRKTHPENTI NGVSLNDERS CSYLLVSLLR 240 ILSNVQSNTS EQSKDQDLLS HLLKNLASLA GTVNDKNSSG LLSGSQCLQD AGTSSAPPEK 300 EPLQPVGETV NPSRLDMMHR GVLGTPDPCQ ITISSNNKAP TEANTVEATV GKMKLNNIDL 360 NMVYDDSQDC MEPTESFETP ENTDNVPIWL RRHPHKSSPP QTSGNSGSTA TQSPSSSSGE 420 AQSRTDRIVF KLFGKDPNEL PIVLRNQILD WLLHSPTDIE GYIRPGCIIL AIYLRMDNSS 480 WDELCYDLSS HLRKLLDASS NSFWRTGWVY TRVLDHVAFV CDGQIVLNTA LPHKSHRKSS 540 ILNITPIAVS ASESTQFSVK GFNISWSTSR MLCVLEGSYL LQTSCSDLME AADSLIKHED 600 TQSLSFSCPI PHISGRGFIE IEDDSLSSSF FPFIVAEQDV CSEIRTLESD LDVVETSDDT 660 EREKKEIEAR TRALEFVNEM GWLLHRSQLK VRLGSMDPSS DSFSFKRFRW LIEFSIDHDW 720 CAVVKKLLGI ILNGAVETAE HGSVEVALVE VGLLHRAVRR NSNRMVSLLL NYHPENVSGS 780 VLFRPDAAGP GGLTPLHIAS GKDGSESVLD ALTDDPLLVG LDAWRNSRDS SGLSPYDYAS 840 LRGHYNYIHL VQRKMNKKRS EKGHVVVDMP PTESPLFKVA AGFETEKGVV VTRAISSCSR 900 CERKVAYYGG GRSSLAIYKP AMLSMVAIAA VCVCVALLFK SSPQVMYVFQ PFIWERLKYG 960 AS

Sequence ? help Back to Top

Protein Sequence Length: 962 aa Download sequence

MEAKFGGNPH HYYGPVVSDL KAVGKTSMEW DLNDWKWDGD LFAATPLNAI SSDCRSRQLF  60
PVTSGADANT GVSNSSSSCS DEGKRELEKR RRVVVLDEEE QVGDEVGALN LNLGGQMYSW  120
EGKSGKKSKV GGATPNRAVC QVDDCQTDLT GAKDYHRRHK VCNLHSKSTK ALVGNVMQRF  180
CQQCSRFHAL QEFDEGKRSC RRRLAGHNRR RRKTHPENTI NGVSLNDERS CSYLLVSLLR  240
ILSNVQSNTS EQSKDQDLLS HLLKNLASLA GTVNDKNSSG LLSGSQCLQD AGTSSAPPEK  300
EPLQPVGETV NPSRLDMMHR GVLGTPDPCQ ITISSNNKAP TEANTVEATV GKMKLNNIDL  360
NMVYDDSQDC MEPTESFETP ENTDNVPIWL RRHPHKSSPP QTSGNSGSTA TQSPSSSSGE  420
AQSRTDRIVF KLFGKDPNEL PIVLRNQILD WLLHSPTDIE GYIRPGCIIL AIYLRMDNSS  480
WDELCYDLSS HLRKLLDASS NSFWRTGWVY TRVLDHVAFV CDGQIVLNTA LPHKSHRKSS  540
ILNITPIAVS ASESTQFSVK GFNISWSTSR MLCVLEGSYL LQTSCSDLME AADSLIKHED  600
TQSLSFSCPI PHISGRGFIE IEDDSLSSSF FPFIVAEQDV CSEIRTLESD LDVVETSDDT  660
EREKKEIEAR TRALEFVNEM GWLLHRSQLK VRLGSMDPSS DSFSFKRFRW LIEFSIDHDW  720
CAVVKKLLGI ILNGAVETAE HGSVEVALVE VGLLHRAVRR NSNRMVSLLL NYHPENVSGS  780
VLFRPDAAGP GGLTPLHIAS GKDGSESVLD ALTDDPLLVG LDAWRNSRDS SGLSPYDYAS  840
LRGHYNYIHL VQRKMNKKRS EKGHVVVDMP PTESPLFKVA AGFETEKGVV VTRAISSCSR  900
CERKVAYYGG GRSSLAIYKP AMLSMVAIAA VCVCVALLFK SSPQVMYVFQ PFIWERLKYG  960
AS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	93	KRRRV
2	89	129	KRRRVVVLDEEEQVGDEVGALNLNLGGQMYSWEGKSGKKSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein