PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024993626.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 239aa    MW: 26656 Da    PI: 8.6019
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024993626.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89e-1996150256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tk q   Lee+F+ + +++ ++++eLAk l+L+ rqV vWFqNrRa+ k
  XP_024993626.1  96 RKKLRLTKAQSGLLEEAFKLHTNLNPKQKQELAKDLKLKPRQVEVWFQNRRARTK 150
                     678899***********************************************98 PP

2HD-ZIP_I/II119.12.4e-3896185190
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                     +kk+rl+k q+ lLEe F+ +++L+p++K+ela++L+l+prqv+vWFqnrRARtk+kq+E+++++Lk+++d+lk+en+rL++eveeL++e
  XP_024993626.1  96 RKKLRLTKAQSGLLEEAFKLHTNLNPKQKQELAKDLKLKPRQVEVWFQNRRARTKLKQTEVECDYLKKCCDTLKDENRRLRQEVEELKAE 185
                     69*************************************************************************************975 PP

Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MGFHSFAANT QLVLELGLNS SSSASIPQNP SKISNPTTHH HHHPSLTLAL SGDSCGGSSF  60
SNASVKRERE VASEESERVN TSGTDQEDED GSVSGRKKLR LTKAQSGLLE EAFKLHTNLN  120
PKQKQELAKD LKLKPRQVEV WFQNRRARTK LKQTEVECDY LKKCCDTLKD ENRRLRQEVE  180
ELKAEKVSTT SQTVYMQLPA ATLSMCPSYE HMPNPKTPFT MPPKPHFLNP FTTSSSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145153RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.19e-63HD-ZIP family protein