PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024993626.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 239aa MW: 26656 Da PI: 8.6019 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.8 | 9e-19 | 96 | 150 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee+F+ + +++ ++++eLAk l+L+ rqV vWFqNrRa+ k XP_024993626.1 96 RKKLRLTKAQSGLLEEAFKLHTNLNPKQKQELAKDLKLKPRQVEVWFQNRRARTK 150 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 119.1 | 2.4e-38 | 96 | 185 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k q+ lLEe F+ +++L+p++K+ela++L+l+prqv+vWFqnrRARtk+kq+E+++++Lk+++d+lk+en+rL++eveeL++e XP_024993626.1 96 RKKLRLTKAQSGLLEEAFKLHTNLNPKQKQELAKDLKLKPRQVEVWFQNRRARTKLKQTEVECDYLKKCCDTLKDENRRLRQEVEELKAE 185 69*************************************************************************************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence |
MGFHSFAANT QLVLELGLNS SSSASIPQNP SKISNPTTHH HHHPSLTLAL SGDSCGGSSF 60 SNASVKRERE VASEESERVN TSGTDQEDED GSVSGRKKLR LTKAQSGLLE EAFKLHTNLN 120 PKQKQELAKD LKLKPRQVEV WFQNRRARTK LKQTEVECDY LKKCCDTLKD ENRRLRQEVE 180 ELKAEKVSTT SQTVYMQLPA ATLSMCPSYE HMPNPKTPFT MPPKPHFLNP FTTSSSAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 153 | RRARTKLKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 9e-63 | HD-ZIP family protein |