PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024993578.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 206aa MW: 24132.8 Da PI: 4.9296 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.8 | 4.3e-19 | 18 | 71 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 R +ft++q+ Le +Fe ++ p +++ + A+klgL rqV +WFqN+Ra+ k XP_024993578.1 18 GRKRFTDKQISFLEYMFETQSRPELRMKHQVANKLGLHPRQVAIWFQNKRARSK 71 6999************************************************99 PP | |||||||
2 | HD-ZIP_I/II | 103.8 | 1.4e-33 | 19 | 108 | 3 | 92 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ++r++++q+++LE +Fe++++ e + K+++a++Lgl+prqva+WFqn+RAR k++q+E++y++Lk+ y++l+++ e+L+ke+++L ++l+ XP_024993578.1 19 RKRFTDKQISFLEYMFETQSRPELRMKHQVANKLGLHPRQVAIWFQNKRARSKSRQIEQEYNTLKQDYETLASKSESLKKENQALLNQLE 108 79************************************************************************************9997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence |
MSVSGASIVE TRRNKNEGRK RFTDKQISFL EYMFETQSRP ELRMKHQVAN KLGLHPRQVA 60 IWFQNKRARS KSRQIEQEYN TLKQDYETLA SKSESLKKEN QALLNQLEML RDVADRHQEN 120 TRRLDSIGNS SSEDSDDRMT TSPTKNDANI TLESYSQEIS VPFYENVAYV GEESKFVVIE 180 EQLCSVNDWE ETTCGFEPDV PMWWEF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 8e-34 | HD-ZIP family protein |