PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024993480.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 279aa    MW: 31952.2 Da    PI: 8.1729
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024993480.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.62.2e-11218265246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                       +W  eE+  l  +vk++G+g+Wk+I  + +    gR+  ++k++w++
   XP_024993480.1 218 RAWGFEEENALWIGVKKYGKGNWKLILTMYPdifVGRSVVDLKDKWRN 265
                      68*********************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MDIDVSDHNL SLKKSLLLRK IESDILKGTV SEPVLELLET IQELDQKEGV VEVPETMKTA  60
YCAVAVHCAL RLLRGNITKK EKYSDVVKMI WKDRALQMEK FFDMPVAASS GMEWISEELK  120
NWMCNMKAGV WDPTSVCKNV SVMKYIKCKD VVEMVRLYVV EAKEKMGPSF LELAAEKLSG  180
DVIKEVTDGV GKVQNEQQEG ERNESSLIKG LLKRRPKRAW GFEEENALWI GVKKYGKGNW  240
KLILTMYPDI FVGRSVVDLK DKWRNMSRYE SYLESKNVG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.15e-11MYB_related family protein