PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024993456.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | YABBY | ||||||||
Protein Properties | Length: 199aa MW: 21896.8 Da PI: 6.4971 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 197.4 | 6e-61 | 9 | 168 | 7 | 165 |
YABBY 7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 eq+CyvqC+fC+t+l+vsvP ++l++vvtv+CGhCtsllsvn++ +s +l ++ ++ + ++ +e + + + k +++s+s +s XP_024993456.1 9 DEQICYVQCGFCTTVLLVSVPCSCLSMVVTVKCGHCTSLLSVNMMRSSflplHLFSSLDN---QEEP-TVEVCREDVQVPKPALLSKHSSSPLIS 99 69******************************************9998644455555554...4333.444555555555666666677777776 PP YABBY 98 seklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 s++ +e++d+++ v + v++PPekrqr+Psayn+fikeei+r+k++ P++sh++afs+aaknWah P+ XP_024993456.1 100 SSSSDEDNDDDLVLVNHvVNKPPEKRQRAPSAYNKFIKEEIRRLKTQHPNMSHKQAFSTAAKNWAHSPP 168 6666666666666565559***********************************************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence |
MSALNHLLDE QICYVQCGFC TTVLLVSVPC SCLSMVVTVK CGHCTSLLSV NMMRSSFLPL 60 HLFSSLDNQE EPTVEVCRED VQVPKPALLS KHSSSPLISS SSSDEDNDDD LVLVNHVVNK 120 PPEKRQRAPS AYNKFIKEEI RRLKTQHPNM SHKQAFSTAA KNWAHSPPSQ QNEGGKSKGS 180 GNESTVMMIQ EPGSDDQPS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 5e-52 | YABBY family protein |