PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024993259.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 442aa MW: 49246.6 Da PI: 7.1041

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024993259.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.5	2.4e-13	268	312	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 n+ Er+RRd+iN+++ L++l+P++ K +Ka++L + +eY+k+Lq XP_024993259.1 268 NQSERKRRDKINEKMKMLQKLVPNS-----SKTDKASMLDEIIEYVKQLQ 312 899*******************8.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MSRCVPSWDL EDVNANHDVF RLEYEVAELK WENGQLAMHE LGSRRVPTKS HSTTSILPKY 60 TWEKPRAAET LEAIVNQATL QSYCKTQEAV DEEEEEIVLW LNQNHHLPTA AVGSVNALSA 120 TTTSDALVPS ANNRSDVDVR SGPSTMSVRD AGCSTRVGSC SGDPSAFVDR RVARGGGEAH 180 DWSSCRDQSL SESGTFVTLD TCDGDLDGRR LMSTSTAWPE NTSSGKDFSK STSRDDSVSH 240 PRTQVTSQIV KEKCSISNKR KRMPAIRNQS ERKRRDKINE KMKMLQKLVP NSSKTDKASM 300 LDEIIEYVKQ LQSYIHMINR MNISSMMMPL AMQQQQQMQM SMMSSMGMGM GMGMGMGMGG 360 MDMNTIGCSN IPTRFHPSTF MHMPSWNNHT TNPAANNTVL PADPMYTFLG CQPQSQPMNM 420 DAYSRALYQH MQNQPCAPIP KN

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MSRCVPSWDL EDVNANHDVF RLEYEVAELK WENGQLAMHE LGSRRVPTKS HSTTSILPKY  60
TWEKPRAAET LEAIVNQATL QSYCKTQEAV DEEEEEIVLW LNQNHHLPTA AVGSVNALSA  120
TTTSDALVPS ANNRSDVDVR SGPSTMSVRD AGCSTRVGSC SGDPSAFVDR RVARGGGEAH  180
DWSSCRDQSL SESGTFVTLD TCDGDLDGRR LMSTSTAWPE NTSSGKDFSK STSRDDSVSH  240
PRTQVTSQIV KEKCSISNKR KRMPAIRNQS ERKRRDKINE KMKMLQKLVP NSSKTDKASM  300
LDEIIEYVKQ LQSYIHMINR MNISSMMMPL AMQQQQQMQM SMMSSMGMGM GMGMGMGMGG  360
MDMNTIGCSN IPTRFHPSTF MHMPSWNNHT TNPAANNTVL PADPMYTFLG CQPQSQPMNM  420
DAYSRALYQH MQNQPCAPIP KN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	259	275	KRKRMPAIRNQSERKRR
2	260	276	KRKRMPAIRNQSERKRR
3	271	276	ERKRRD
4	272	277	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	6e-50	bHLH family protein