PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024993182.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | TCP | ||||||||
Protein Properties | Length: 234aa MW: 27089.9 Da PI: 6.4256 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 109.9 | 3.8e-34 | 26 | 134 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssas.ns 85 g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l++ ++s+a + +++++++++s ++ XP_024993182.1 26 GRKDRHSKVCTSKGLRDRRVRLAADTAIQFYDVQDRLGYDRPSKAIDWLMKEAKTAIDALNNGhhdhdllttflNTSAAFHRTSGERNQQVStHN 120 89************************************************************978888887777555553332222222222123 PP TCP 86 ssg..........k 89 ++g + XP_024993182.1 121 QIGsfnnyplefiS 134 33344444444431 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence |
MRMRQNRAQQ GEIIEVEGGR IVRSLGRKDR HSKVCTSKGL RDRRVRLAAD TAIQFYDVQD 60 RLGYDRPSKA IDWLMKEAKT AIDALNNGHH DHDLLTTFLN TSAAFHRTSG ERNQQVSTHN 120 QIGSFNNYPL EFISSRNKRH ENPIEELIIP MDFTWNPSYK PGDGFAVVDR EPLQSSSPAT 180 IQTFNNEFVD DESFLGFDFQ QENHLQEEEN RNLLSKNYRF SGTSILHYED QQQS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.2 | 1e-39 | TCP family protein |