PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024993043.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 198aa MW: 21326.1 Da PI: 8.6055 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 88.6 | 7.9e-28 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C +C+vlr++C ++Cvl+p++ p+++++++ +v k+FG++ ++++++++p ++r+++++sl++eA r+ +Pv+Ga+g++++++++l+q+ XP_024993043.1 2 SCHGCRVLRKRCDDSCVLRPCLdwidsPEAKARATLFVSKFFGRTDLINFISSVPIHKRNALFQSLLFEAVGRTVNPVNGAIGLLSTGNWHLCQA 96 6*********************************************************************************************9 PP DUF260 91 kaelal 96 ++ ++l XP_024993043.1 97 AVRTVL 102 988766 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence |
MSCHGCRVLR KRCDDSCVLR PCLDWIDSPE AKARATLFVS KFFGRTDLIN FISSVPIHKR 60 NALFQSLLFE AVGRTVNPVN GAIGLLSTGN WHLCQAAVRT VLAGGTPTVL SNSFHHIPEI 120 DGRSGVSETG GSWSAMMIRN QIPSGKCSIT NAAPLANJKV AXSAAGDEQX FSASNISKVL 180 MSFRCSDGEE PKLLNLLV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37540.1 | 1e-51 | LBD family protein |