PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024993004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 228aa MW: 26017.5 Da PI: 4.5631 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.3 | 2.4e-12 | 61 | 106 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ++ErrRR++++s++ eLr+l+Pk + l+K +i + A++YIk+Lq XP_024993004.1 61 NLKAERRRREKLKSRMLELRSLVPKI-----TNLNKETIITDAIDYIKELQ 106 5689*********************6.....68*****************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence |
MEFSNLFDLQ IPPPPPPVVE ETHTSFERVI CRNSRRQQYH DDDDQDDDDD TNHEGKFKSK 60 NLKAERRRRE KLKSRMLELR SLVPKITNLN KETIITDAID YIKELQSSVT DLQNEIVEME 120 AEMAHEQPSE IIQVPSEEKM ENWGIESDVE VTRIDENKSW MKIVFGKKAG GFTKLIEAMS 180 VLGVELVDTS VTATKGALLV TSCIKGTQGK MLDSEQVQEV LVEIIKAI |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 65 | 70 | ERRRRE |
2 | 66 | 71 | RRRREK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G21330.1 | 6e-28 | bHLH family protein |