PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024992906.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | bHLH | ||||||||
Protein Properties | Length: 412aa MW: 45064.9 Da PI: 6.0441 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.8 | 2.5e-05 | 306 | 339 | 17 | 55 |
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ L++l+ + +K + a++L +A++YIk+L+ XP_024992906.1 306 GDRVTALQQLVSPF-----GKTDTASVLHEAIDYIKHLH 339 55666677777776.....8*****************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence |
MAEEFQAEVC GGSWWSSPRA TFNQSSYIGN YGGCWQSDLM NMKTWSTEDS SDHDSTTVFQ 60 KSGGCANAIS PDSAFPMMGG ASPPSTTTNW NQALLVNGRT EEAGSYNQTL PEILNNLPSG 120 GQDCAGFAMD QQQTSSFLTN SGDSTGNLVS TSYGYPSSLL QTLFDSTSPP PPPAAAPPQP 180 PLYDFEANLN DFNPVSSMPR FSSLVKPKQQ VLGGLHLANK TPFWNASVLD SNDNRAGFFA 240 STQSRYLSST TYEEKPNCPN LKSQNEEIRD MGSSVKKTTG DPTFKRPRLE TPSPLPTFKV 300 RKEKLGDRVT ALQQLVSPFG KTDTASVLHE AIDYIKHLHD QVNVLSAPYM KNGATIQRQQ 360 IHDHKVKDTT EGAKHHDLRS RGLCLVPVSS TFPVTTETIP DYWSSSFGNT FR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.1 | 4e-56 | bHLH family protein |