PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024992899.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family LSD
Protein Properties Length: 427aa    MW: 47179.2 Da    PI: 3.9529
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024992899.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD130.46.6e-10389410122
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalC 22 
                     Cg+Cr lLsYPrGA++V Ca+C
  XP_024992899.1 389 CGSCRRLLSYPRGARYVECACC 410
                     ********************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    
MEEDEEAPPG WPSPPTPKKV NMESGEPKEL VKDEDHSEEE EEESKQTEDD DEDEPPPGWQ  60
QQQPPSPPLL DMIDLPPSSP LPPTPPLPSS PREELMCSSS DLNMEQQDSE EEGPPPGWDN  120
KCELKEQVEQ LATPAAVSAI SSDIKREDAQ QDARDEDGSQ PQVQEHTSSA PELVPSDIKV  180
EQEDSEDEGP PPGWDSKCQI EPKLQMECQT TPLSDIKKED VQQDGRDEDG SQPQAHEHPS  240
RAPELVPSDI KVEKEDSEDE GPPPGWYSKC RPEPELQLAS QTTPRSAINH IDPLDFKMEN  300
DQQDTQDEEG PPPGWGSTTQ QQSQDHSSFP SPKVPSGTRM GCEQNNVKVV EERPQQPSRQ  360
PSVPPTKPQI SAPKPPTAGN NPEMGQMVCG SCRRLLSYPR GARYVECACC LEENYVLEGS  420
KSTTTAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.17e-11LSD family protein