PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024992897.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | LSD | ||||||||
Protein Properties | Length: 472aa MW: 52684.7 Da PI: 4.1478 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 30.2 | 7.5e-10 | 381 | 402 | 1 | 22 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalC 22 Cg+Cr lLsYPrGA++V Ca+C XP_024992897.1 381 CGSCRRLLSYPRGARYVECACC 402 ********************** PP | |||||||
2 | zf-LSD1 | 43.3 | 6.1e-14 | 419 | 442 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gC +lL+YP+GAp VRCa+C t XP_024992897.1 419 CEGCNVLLMYPYGAPKVRCANCRT 442 **********************87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence |
MEEDEEAPPG WPSPPTPKKV NMESGEPKEL VKDEDHSEEE EEESKQTEDD DEDEPPPGWQ 60 QQQPPSPPLL DMIDLPPSSP LPPTPPLPSS PRDLNMEQQD SEEEGPPPGW DNKCELKEQV 120 EQLATPAAVS AISSDIKRED AQQDARDEDG SQPQVQEHTS SAPELVPSDI KVEQEDSEDE 180 GPPPGWDSKC QIEPKLQMEC QTTPLSDIKK EDVQQDGRDE DGSQPQAHEH PSRAPELVPS 240 DIKVEKEDSE DEGPPPGWYS KCRPEPELQL ASQTTPRSAI NHIDPLDFKM ENDQQDTQDE 300 EGPPPGWGST TQQQSQDHSS FPSPKVPSGT RMGCEQNNVK VVEERPQQPS RQPSVPPTKP 360 QISAPKPPTA GNNPEMGQMV CGSCRRLLSY PRGARYVECA CCLEENYVLE EHEVGQVVCE 420 GCNVLLMYPY GAPKVRCANC RTETEIIDQN RRPPLSEQRR RVKRHLKRMQ SG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 2e-32 | LSD family protein |