PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024992896.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family LSD
Protein Properties Length: 472aa    MW: 52677.6 Da    PI: 4.1225
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024992896.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD130.27.5e-10381402122
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalC 22 
                     Cg+Cr lLsYPrGA++V Ca+C
  XP_024992896.1 381 CGSCRRLLSYPRGARYVECACC 402
                     ********************** PP

2zf-LSD143.36.1e-14419442124
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                     C+gC +lL+YP+GAp VRCa+C t
  XP_024992896.1 419 CEGCNVLLMYPYGAPKVRCANCRT 442
                     **********************87 PP

Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    
MEEDEEAPPG WPSPPTPKKV NMESGEPKEL VKDEDHSEEE EEESKQTEDD DEDEPPPGWQ  60
QQQPPSPPLL DMIDLPPSSP LPPTPPLPSS PREELMCSSS DLNMEQQDSE EEGPPPGWDN  120
KCELKEQVEQ LATPAAVSAI SSDIKREDAQ QDARDEDGSQ PQVQEHTSSA PELVPSDIKV  180
EQEDSEDEGP PPGWDSKCQI EPKLQMECQT TPLSDIKKED VQQDGRDEDG SQPQAHEHPS  240
RAPELVPSDI KVEKEDSEDE GPPPGWYSKC RPEPELQLAS QTTPRSDFKM ENDQQDTQDE  300
EGPPPGWGST TQQQSQDHSS FPSPKVPSGT RMGCEQNNVK VVEERPQQPS RQPSVPPTKP  360
QISAPKPPTA GNNPEMGQMV CGSCRRLLSY PRGARYVECA CCLEENYVLE EHEVGQVVCE  420
GCNVLLMYPY GAPKVRCANC RTETEIIDQN RRPPLSEQRR RVKRHLKRMQ SG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.12e-32LSD family protein