PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992895.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LSD

Protein Properties

Length: 480aa MW: 53551.7 Da PI: 4.129

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992895.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	30.2	7.6e-10	389	410	1	22
zf-LSD1 1 CggCrtlLsYPrGApsVRCalC 22 Cg+Cr lLsYPrGA++V Ca+C XP_024992895.1 389 CGSCRRLLSYPRGARYVECACC 410 ********************** PP
2	zf-LSD1	43.2	6.2e-14	427	450	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gC +lL+YP+GAp VRCa+C t XP_024992895.1 427 CEGCNVLLMYPYGAPKVRCANCRT 450 **********************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MEEDEEAPPG WPSPPTPKKV NMESGEPKEL VKDEDHSEEE EEESKQTEDD DEDEPPPGWQ 60 QQQPPSPPLL DMIDLPPSSP LPPTPPLPSS PREELMCSSS DLNMEQQDSE EEGPPPGWDN 120 KCELKEQVEQ LATPAAVSAI SSDIKREDAQ QDARDEDGSQ PQVQEHTSSA PELVPSDIKV 180 EQEDSEDEGP PPGWDSKCQI EPKLQMECQT TPLSDIKKED VQQDGRDEDG SQPQAHEHPS 240 RAPELVPSDI KVEKEDSEDE GPPPGWYSKC RPEPELQLAS QTTPRSAINH IDPLDFKMEN 300 DQQDTQDEEG PPPGWGSTTQ QQSQDHSSFP SPKVPSGTRM GCEQNNVKVV EERPQQPSRQ 360 PSVPPTKPQI SAPKPPTAGN NPEMGQMVCG SCRRLLSYPR GARYVECACC LEENYVLEEH 420 EVGQVVCEGC NVLLMYPYGA PKVRCANCRT ETEIIDQNRR PPLSEQRRRV KRHLKRMQSG

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MEEDEEAPPG WPSPPTPKKV NMESGEPKEL VKDEDHSEEE EEESKQTEDD DEDEPPPGWQ  60
QQQPPSPPLL DMIDLPPSSP LPPTPPLPSS PREELMCSSS DLNMEQQDSE EEGPPPGWDN  120
KCELKEQVEQ LATPAAVSAI SSDIKREDAQ QDARDEDGSQ PQVQEHTSSA PELVPSDIKV  180
EQEDSEDEGP PPGWDSKCQI EPKLQMECQT TPLSDIKKED VQQDGRDEDG SQPQAHEHPS  240
RAPELVPSDI KVEKEDSEDE GPPPGWYSKC RPEPELQLAS QTTPRSAINH IDPLDFKMEN  300
DQQDTQDEEG PPPGWGSTTQ QQSQDHSSFP SPKVPSGTRM GCEQNNVKVV EERPQQPSRQ  360
PSVPPTKPQI SAPKPPTAGN NPEMGQMVCG SCRRLLSYPR GARYVECACC LEENYVLEEH  420
EVGQVVCEGC NVLLMYPYGA PKVRCANCRT ETEIIDQNRR PPLSEQRRRV KRHLKRMQSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-32	LSD family protein