PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024992766.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HSF
Protein Properties Length: 367aa    MW: 42308.9 Da    PI: 4.7335
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024992766.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.27.3e-35141052102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F+ k+ye+++d+ +++++sws+n++sfvv+++ ef+ ++Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ +ll++
  XP_024992766.1  14 FIAKTYEMVDDPLTDSIVSWSHNNRSFVVWNPPEFSGELLPRFFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANEDFIRGQPHLLKN 99 
                     9***************************************************************9998.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_024992766.1 100 IHRRKP 105
                     ***985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    
MNDAQSTANS LPPFIAKTYE MVDDPLTDSI VSWSHNNRSF VVWNPPEFSG ELLPRFFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANEDFI RGQPHLLKNI HRRKPVHSHS MQNLHIHGAS  120
STSSPLTESE RNRYKEEIYW LRHEKESLFL EFQTHQQEQQ EIESAARALT DRLKIAVKRQ  180
NDILCVLDTT QILETNDRKR RLSAETNNDQ ASPFNFPISG TRNTDTLLAL DVEMVEQLES  240
SLMFWEDLST DVREALVQQK WQPELDQNAG NCAESPVICY PTINLEMGSN DCETAMNSEV  300
VKGVPTDEEQ VGRKSVNDGF WEQFLTENPG GSTEDNDGRG WGQFGKFWWN MKSVNGLATQ  360
MGQLERT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197202DRKRRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.14e-83HSF family protein